Conserved Protein Domain Family
NS1_C

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pfam12117: NS1_C 
Parvovirus non-structural protein 1, C-terminal
This domain is the transactivation domain of the Parvovirus NS1 protein, located immediately C-terminal to the helicase. Parvovirus are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. They infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contain two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons. NS1 protein is essential for viral life cycle stages, including DNA replication, trans-regulation of the two viral promoters and modulation of heterologous promoters. It exhibits DNA binding, endonuclease and helicase activities and is the major contributor to the toxic effect on host cells.
Statistics
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PSSM-Id: 288933
Aligned: 2 rows
Threshold Bit Score: 281.422
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P03134 552 AKWGKVPDWSENWAEPKVPTPINLLGSARSPFTTPKSTPLSQNYALTPLASDLEDLALEPWSTPNTPVAGTAETQNTGEA 631 Murine minute virus s...
P03134 552 AKWGKVPDWSENWAEPKVPTPINLLGSARSPFTTPKSTPLSQNYALTPLASDLEDLALEPWSTPNTPVAGTAETQNTGEA 631 Murine minute virus s...
P03134 632 GSKACQDGQLSPTWSEIEEDLRACFGAEPLKKDFSEPLNLD 672 Murine minute virus strain MVM prototype
P03134 632 GSKACQDGQLSPTWSEIEEDLRACFGAEPLKKDFSEPLNLD 672 Murine minute virus strain MVM prototype
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