Conserved Protein Domain Family
Period_C

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pfam12114: Period_C 
Period protein 2/3C-terminal region
This domain is found in eukaryotes. This domain is typically between 164 to 200 amino acids in length. This domain is found associated with pfam08447.
Statistics
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PSSM-Id: 403366
View PSSM: pfam12114
Aligned: 25 rows
Threshold Bit Score: 147.175
Threshold Setting Gi: 332029595
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_014331377 1259 HSDGNS-------------SSCDLLDILLqeQEDAHSGTGSATSGSMg----sGLGSGSASGSGSN-DCQTSASGASGSR 1320 southern plat...
1_pfamImport    1 SSDALS-------------VSSDFLDILL--AEDGRS----ASSGSG------ASAASESLGSGSL-GCGTSGTGTGGSE 54  
ETN62980     1556 ESSFSS-------------FYSSFLKTDNssTEGGHNGTEKKDSSEM------CWESSSNNANTGHePEDKNRGGCGRGG 1616 Anopheles dar...
EFN81588      760 SKKVLSpgelfsscvsndgGCSSVVDLLTpvIMKGHRPTDYNGDES---------------------------------- 805  Jerdon's jump...
Q9I8L4       1070 HQDAHS-------------SSSEMLDQLL--QEDARSGTGSNASGSG------SGESGGSLGSGS--GLGSNGTSTSHTG 1126 zebrafish
XP_014342834 1100 NQDNQS-------------TSSELLDLLL--HEDSQSGTGSATSGSR------SAESSGSNGSRSN---RISGSGTES-- 1153 coelacanth
BAE90912      329 NQDALS-------------GSSDLLELLL--QEDSRSGTGSAASGSL------GSGLGSGSGSGSHeGGSTSASITRSSQ 387  crab-eating m...
XP_007242118 1149 NQDAMS-------------TSSDLLDLLL--QEDSRSGTGSAASGSGssgtrsSGSGSGSSGSGSN-GCSSSGSGTRSSQ 1212 Mexican tetra
AHA91697     1176 NQDAMS-------------TSSDLLDLLL--QEDSRSGTGSAASGSGs-----SGSGSGSSGSGSN-GCSTSGSGTRS-- 1232 Mexican tetra
AAI63543     1126 NQDALS-------------TSSDMLDLLL--QEDSRSGTGSSGSGSG----------SGSFASGSN-GCSTSGSGTRS-- 1177 zebrafish
XP_014331377 1321 TgsSNTSKY----FGSIDSLEHDPKGKGKtrneggsesskSAQGEGEHL-IKYVLQEPLWLLMANADDKVMMTYQMPSRD 1395 southern plat...
1_pfamImport   55 T--SRTSKY----FGSVDSSENDQGVRAD-----------PRLGEGERL-MRSALQDPIWLLMAGADQDVMMTYQLPQRT 116 
ETN62980     1617 N--SDGMVR----PGTGDICRAKR------------------------------RPNPPWLDNVCQTKDLIYRYQINERS 1660 Anopheles dar...
EFN81588      806 ---SSSSFYssflYKSSDSSCNPDQKTCE-----------VSSEEHTKChQGMRRRDPPWLEGVQLTPELIYEYQMHPKT 871  Jerdon's jump...
Q9I8L4       1127 S--SNSSKY----FASNDSSDTSRKARKS-----------AEAQERERSgFKKHVDDPLWSMIKQTPEPVMLTYQISSRD 1189 zebrafish
XP_014342834 1154 ---SNSLEY----FASNDSSDTSQKEKKS-----------SEAKGEDKV-FKKCMGSSIWTMIESTPEAVMMTYQIPARD 1214 coelacanth
BAE90912      388 S--SHTSKY----FGSIDSSEAEAGAAR------------GGAEPGDQV-IKYVLQDPIWLLMANADQRVMMTYQVPSRD 448  crab-eating m...
XP_007242118 1213 S--SHTSKY----FGSIDSSENDHSRKQT-----------AGGDGEAQF-IKCVLQDPIWLLMADTDEKVMMTYQLPIRD 1274 Mexican tetra
AHA91697     1233 ---SNTSKY----FGSIDSSENDHGHKQA-----------SGDSGEEQF-IKYVLQDPIWLVMANTDEKVMMTYQMPKRD 1293 Mexican tetra
AAI63543     1178 ---SNTSKY----FGSIDSSENDQNHKPA-----------SGDLGGEQF-IKFVLQDPIWLLMANTDDKIMMTYQIPIKD 1238 zebrafish
XP_014331377 1396 IQRVLREDKERLRQMQKSQPHFTSEQRRELVEEHPWMRRGGLPAAINVKECVYCEDAAQD--AAPL--------EEDLPD 1465 southern plat...
1_pfamImport  117 PEAVLKEDRERLKLMQKFQPRLGTSRRGSCTRCTRGCPRVALPRALDLVECPDCQDGPRErgDAPH--------EEDGPA 188 
ETN62980     1661 LEELLDSDSLALKKIS--QPILVNDQ---LGQLYLDLELEGLSAKLSLSEATSGSSSDDCdtKDKT--------KVTKRN 1727 Anopheles dar...
EFN81588      872 LNEVLKADMDAMKNFN--QPLLVNDQ---LGQLYLDLEVEGFGTELVLEEGITSSGSDSGssNGSWteva-sqcKQRRRM 945  Jerdon's jump...
Q9I8L4       1190 QAQVLQEDREKLILMQPMQPWFTSDQKKELAEVHPWIQQNTVPQEINTQGCVSCNTI------EPNeklnlqtdSPNPPD 1263 zebrafish
XP_014342834 1215 QKTVLKEDLEKLLAMQTMQPCFTENQKKELAEVHPWILKHVVPKERDMQSCIACDKLVVGsvASPS--------HLESSE 1286 coelacanth
BAE90912      449 MTSVLKQDRERLRAMQRQQPRFSEDQRRELGAVHSWVRKGQLPRALDVMACVDCGSSTQDp-GHPD--------DPLFSE 519  crab-eating m...
XP_007242118 1275 RETVLHEDRIALRAMQKHQPRFTDEQKRELSQVHPWIRTGRLPRAINISTCTGCKSPPSVppTAPF--------DVEIHE 1346 Mexican tetra
AHA91697     1294 RDTVLREDRELMKTAKMQQPHFTEKQKKELSQVHPWIQTGCLPKAINITSCIGCGSPTEAssAPPF--------DVELHD 1365 Mexican tetra
AAI63543     1239 KDSVLKEDRDALKAAQKHQPHFTEEQKKELTQVHPWIQTGCLPKAINVTSCTGCESPPDSstLPPF--------DLEFHE 1310 zebrafish
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