Conserved Protein Domain Family
Sox17_18_mid

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pfam12067: Sox17_18_mid 
Sox 17/18 central domain
This is the central region of eukaryotic SOX17 and 18 transcription factor proteins. It lies just downstream of the HMG-box family, pfam00505, and is followed by a C-terminal domain.
Statistics
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PSSM-Id: 403331
View PSSM: pfam12067
Aligned: 33 rows
Threshold Bit Score: 48.4071
Threshold Setting Gi: 551497445
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4RR75       180 FRDPAGSNS-SFDtyPYGLPTpPEMSPLDAMDHEhvpPAYYSTSasssvscsssvsCPEDvH--HQNH--TH 246 spotted green pufferfish
Q8AWH3       191 YREPQAMAP-HYD--GYSLPT-PESSPLDLAEAD---PVFFTSP------------PQDE-C--QMMPy-SY 239 tropical clawed frog
XP_006085339 203 YRDCQGLGAaPLD--GYPLPT-PDTSPLDGVDPD---PAFFAAP------------LPGD-CpaAAGPy-SY 254 little brown bat
XP_010597840 203 YRDCQSLGApPLD--GYQLPT-PDTSPLDGVEPD---PFAPRCP------------LPAD-CpaAAGAy-NY 254 African savanna elephant
XP_006633984 195 YRESQNMGA-HYE--SYNLPT-PDTSPLDVVEND---SVYFSPHp----------hSQED-C--HMMPayAY 246 spotted gar
XP_010779996 196 YRDAQGLGGpSYE--SYSLPT-PDTSPLDAVESD---LMFFPSH------------SQED-C--HMMPayAY 246 black rockcod
XP_003439290 195 YRDAQALGGpSYE--TYSLPT-PDTSPLDAVESE---SMFFPPH------------SQED-C--HMMPaySY 245 Nile tilapia
CAF89042      95 YRDAQALGGpSYE--AYSLPT-PDTSPLDAVEPD---SMFFQPH------------SQED-C--HMMPtyPY 145 spotted green pufferfish
XP_002925690 201 YRDCQGLGApPLD--GYPLPT-PDTSPLDGvxx------xxAAP------------LPGD-Cp-AAGPy-SY 248 giant panda
XP_010837318 131 YRDCPGLGApQLD--GYPLPT-PDTSPLDGVEPD---PAFFAAP------------LPAD-Cp-APGPy-SY 181 Bison bison bison
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