Conserved Protein Domain Family
CCB1

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pfam12046: CCB1 
Cofactor assembly of complex C subunit B
Cofactor maturation pathways such as the CCB system (system IV) for cytochrome c-heme attachment are conserved in all organisms performing oxygenic photosynthesis. The CCB system consists of four protein, CCB1-4. The four CCBs are well conserved between green algae and plants.
Statistics
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PSSM-Id: 403311
View PSSM: pfam12046
Aligned: 57 rows
Threshold Bit Score: 117.619
Threshold Setting Gi: 81708693
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015164712   9 LDSALFLTSLLIVGLFFFIKGSTKDRTQSWLFEAE--------GlIDDQLLERVRYYLQQRAYKVIKiepERELVTLEGH 80  Pseudanabaena s...
CBN79123     120 YYTTLGLYVLSFPGLWSVVKRATKTKYKDATYELPgpastekgAeSVKQTAAKIIAYFQANNYKIKE---AGETITFEGA 196 Ectocarpus sili...
EED86464       6 YYTTLALYAASFPGLWSQIKRSTKAKVKRKTYVSAgea--aegGkELRQQAGEIMAYMKANNYEVAE---AGETITFRGL 80  Thalassiosira p...
XP_002184661  40 YYTILGLYALSFPGLWSTVARSTKAKIKRKTYVSAgekadgtqGlGLRQQAGEIMAYMKANNYEVVD---AGETITFRGV 116 Phaeodactylum t...
EFN50526      93 YYVSLGLFVMTVPGLWSLIKRSPKAKIKRKTFEVAgpg--npaAlPLDVRARQIFDYFKKYNYEVKE---RGEVITFEGT 167 Chlorella varia...
XP_001697876  87 LYVTLALFLMSVPGIWSTVKRAPQAAKKRLTFEVPgpa--vegAmSLDDRARQIFRYFKRYNYDVKE---TGEVIVFEGI 161 Chlamydomonas r...
XP_003059208  29 YFATLGLFVLSAPGLWSLVKRSAKSKVDRKTFEVAgps--atpSmPLDELAREIAAFFRRNNYVVAD---AGEVITFEGN 103 Micromonas pusi...
XP_002973398  15 YYTSLGLFVLALPGLWSLIKRSAKSKIVRKTYVVPgps--qesGkAPKQIAGEISSFFTRNNFTIVD---SGEVVRFEGL 89  Selaginella moe...
XP_004979381  74 YYTSLGLFVLSVPGLWSLIKRSVKSKIVQKTFVKEga-----qSmAPNQVAGEILSFFTRNNFTVSD---RGEVITFEGT 145 foxtail millet
XP_002276522  89 YYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEge-----gKnKPNHMAGEILSFFSRNNFVVSD---RGETITFEGM 160 wine grape
WP_015164712  81 VKPSAFLAGLLVFLSALGLACLGLVLSILLPTIGN------YFLFLCLMAPLAGVFYWRGADRDEQISLQLRSgdlnssn 154 Pseudanabaena s...
CBN79123     197 IQASKGQAFFLVFCTALSFATLALVLQIQFPAIGN------YWFLLTLLSPYAGVYYWQNGSRNDKAQVRLET------- 263 Ectocarpus sili...
EED86464      81 VARSTSQAFFLTFCTALGMASLALVLQIQFQDVDF------NWFYLTLLSPYAGIYYWRSGDRVDDMKVKLAA------- 147 Thalassiosira p...
XP_002184661 117 IPRSLSQALFLSFVTIFGMLSLALVLNIQFNDLELpligkpNWYLLALLGPYAGIYYWQSGDRVDDCSVKLVT------- 189 Phaeodactylum t...
EFN50526     168 YAASASQASALVLYTLVGLASTALVLSITVPQVGS------WWYALCALSPAAGAYYWRNAERTEEFRVKMVT------- 234 Chlorella varia...
XP_001697876 162 YAADKGQAAAITFYTFVGMASVALVLSILVPQVGN------WWYGLTALSPAAYAYYMQRGTRPEQFRVKMVT------- 228 Chlamydomonas r...
XP_003059208 104 IAPEKGTAAYITFCVAVGLLCIALVCSIALPG-GN------LWYSIALISPLSGTYYMDNAGRKEKVKVKMVT------- 169 Micromonas pusi...
XP_002973398  90 MVPSRGQAAFIIFCTFLSLASAALVLTITVPVVGD------KWYWLTAFSPLAGAYYWTNASRKEEIQVKLVV------- 156 Selaginella moe...
XP_004979381 146 MVPSRGQAALLTFCTCISLGSVGLVLSIAVPEGGN------NWFWLMTLSPLAGVYYWTKASRKEEIKVKMIL------- 212 foxtail millet
XP_002276522 161 MVPSRGQAALLTFCTCISLASVGLVLTITFPDVGN------NWFWLTILSPLAGAYYWKRASRKEQIKVKMIV------- 227 wine grape
WP_015164712 155 vseteqlsesASTPLSSRIWVSAHKDELVTMQKSLNLV 192 Pseudanabaena sp. PCC 7367
CBN79123     264 ----------SDDDTLTEIYITGAAEELDRLSKTMGYM 291 Ectocarpus siliculosus
EED86464     148 ----------NDDDTLNEITIEGNDEEIERMWRTLDLQ 175 Thalassiosira pseudonana CCMP1335
XP_002184661 190 ----------NEEETENEITVQGSEEELERMWRTLGWQ 217 Phaeodactylum tricornutum CCAP 1055/1
EFN50526     235 ----------SDDEQTTDIVVEGDDEEIERFWKELGLM 262 Chlorella variabilis
XP_001697876 229 ----------ATDDQTTDIIVEGDKEEIERFWKELGLV 256 Chlamydomonas reinhardtii
XP_003059208 170 ----------ADDDMTTDIIVEGDVEEIERMRRDLNLV 197 Micromonas pusilla CCMP1545
XP_002973398 157 ----------ADDESSTDVLVQGDDEQIEQLRKELGFM 184 Selaginella moellendorffii
XP_004979381 213 ----------SDDGNVSEILVQGDDVQVEQMRKELKFS 240 foxtail millet
XP_002276522 228 ----------ADDGTLSEIIVQGDDQQVEQMRKELQLS 255 wine grape
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