Conserved Protein Domain Family
Alanine_zipper

?
pfam11839: Alanine_zipper 
Alanine-zipper, major outer membrane lipoprotein
This is a family of a major outer membrane lipoprotein, OprL that is an alanine-zipper. Zipper motifs are a seven-repeat motif where the first and fourth positions are occupied by an aliphatic residue, usually a leucine. These residues are positioned on the outside of the coil such as to bind firmly to one or more monomers of the protein to create a triple or five-helical coiled-coil that probably forms a seam in a membrane.
Statistics
?
PSSM-Id: 371756
View PSSM: pfam11839
Aligned: 25 rows
Threshold Bit Score: 27.3592
Threshold Setting Gi: 500472212
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
jgi:Geob_0132     31 AQEQLTGAKADQAIRDAQAAKAAADAAKLQADAAAARVENAvkmaeerEKAAAEREKAADEKAARAEAIFQKSMRK 106 Geobacter dalto...
Q7MFG1            32 AQVEDLKNQVDVLTKEVAALKSNQADAEMKAKEAAT--------------AAMAAQEEAERANERIDNIAQ-SYTK 92  Vibrio vulnific...
CCO61476          29 KKIDELTNQVQQLSQQVSSLQSSQEKASMKAEEAASAANGA-------KNAAMSAQQEASRANSRIDNIAQ-SYTK 96  Vibrio nigripul...
WP_012545357      34 DRIGKLESKVNNLESKVNAIDKKVDDCCTKADEAAKKAEAA-------AQRAEDAAKRAEAASQKAGKAFELQQKK 102 Thermodesulfovi...
jgi:Nit79A3_3180  31 GQLEEHQNKL---SADIAAAKADASAAKAAADAANAKANDA-------VRIAEEANRRSMDTESKIDRMFKKAMHK 96  Nitrosomonas sp...
Q82TI0            26 GEVEALKSRVDALESNVSATKSDAAAARAAANDAVNIANQA-------MDKANEANARSIDTETKIDRMFKRAMHK 94  Nitrosomonas eu...
Q60B76            38 SDITNLQTQIDGLKAEQASIKSTADEALSAAQAAESKAGAA-------EAAARRAAAAAEETNSKLDRMFKKSMMK 106 Methylococcus c...
EIC30925          24 GDIENLQGQIDGLKTDVAKASSDASSALAAANDASSRAAAA-------EAAANRAADAAQATNDKLDRLFHKTMMK 92  Methylomicrobiu...
WP_013817097      24 SDIENLQGQIDSLKPQVAAASADAASAKAAAAEAAAKAAAA-------EAAANRAAQYAQDTNSKLDRMFRKSQHK 92  Methylomonas me...
WP_014147711      24 SDTENLQSQIDDLNTKVSRAASDAASAKSAAADASARAAAA-------EAAANRAASYAQDANSKLDRLFKKSMMK 92  Methylomicrobiu...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap