2JOB


Conserved Protein Domain Family
DUF3254

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pfam11630: DUF3254 
Click on image for an interactive view with Cn3D
Protein of unknown function (DUF3254)
This family of proteins is most likely a family of anti-lipopolysaccharide factor proteins however this cannot be confirmed.
Statistics
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PSSM-Id: 152066
View PSSM: pfam11630
Aligned: 11 rows
Threshold Bit Score: 135.584
Threshold Setting Gi: 239977067
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JOB_A     5 QGWEAV-AAAVASKIVGL--WRNEKTELLGHECKFTVKPYLKRFQVYYKGRMWCPGWT---AIRGEASTRSQSGVAGKTA 78 
Q1XI22    26 QGWEAL-VPAIAEKLTGL--WENGELELLGHYCNFYVEPKFRNWQLRFKGRMWCPGWT---IIKGEADTRSRSGVVGKTI 99  Penaeus japonicus
A0A1E4    26 QGWQAV-AAAVASKIVGL--WRNEETELLGHKCRFTVKPYIKRLQLHYKGKMWCPGWT---PITGEARTRSHSGVAGRTA 99  white shrimp
Q2TJP7    26 QGWEAV-AAAVAVKIVGL--WRNEKTELLGHECKFTVKPYIKRFQLYYKGRMWCPGWT---AIRGEAKTRSRSGVAGRTA 99  Penaeus chinensis
ABG82027  26 GWLDRI-IGTAVDSVAEF-----GTTNIVDQICNTRVMPTIKKFELYFRGRVWCPGWT---TIQGESLTRSRTRVVNKAV 96  Chinese mitten crab
A1YV58    26 QALNKL-MPKIVSAIIYMigQPNAGVTFLGHQCLVE---STRQPDGFYTAKMWCTSWTsdnPIVGEGRSRVELEALKGSI 101 giant mud crab
Q9BP36     4 GIWTQL-ALALVKNLATL--WQSGDFQFLGHECHYRVNPTVKRLKWKYKGKFWCPSWT---SITGRATKSSRSGAVEHSV 77  Tachypleus tridentatus
ABP73291  23 QGVQDL-LPALVEKIAGL--WHSDEVEFLGHSCRYSQRPSFYRWELYFNGRMWCPGWA---PFTGRSRTRSPSGAIEHAT 96  black tiger shrimp
ABQ12866  23 QVPPEV-VSLIISKLVNL--WSDGQVEFMGHTCNYSYSPTISKFQLYYKGKMWCPGWA---PFSGNSKTKSRAGSIEHAT 96  signal crayfish
ABP96982  27 Q-YEAL-VASILGKLSGL--WHSDTVDFMGHTCHIRRRPKFRKFKLYHEGKFWCPGWT---HLEGNSRTKSRSGSARDAI 99  green mud crab
Q4U5R2    27 FSLKDLfVPVIKDQVSDL--WRTGDIDLVGHSCTYNVKPDIQGFELYFIGSVTCPGWT---TLRGESNTRSKSGVVNSAV 101 blue shrimp
2JOB_A    79 KDFVRKAFQKGLISQQEANQWLS 101
Q1XI22   100 QDFVKKAFSQGLITEEEARAWLS 122 Penaeus japonicus
A0A1E4   100 RDFVQKAFERGLISEQDAKRWLS 122 white shrimp
Q2TJP7   100 KDFVRKAFQQGLISQQQANQWLN 122 Penaeus chinensis
ABG82027  97 EDFARKAVAAGLMTQEDANPLLN 119 Chinese mitten crab
A1YV58   102 RNFVQTASDYKKFTIEEVEDWIA 124 giant mud crab
Q9BP36    78 RDFVGQAKSSGLITEKEAQTFIS 100 Tachypleus tridentatus
ABP73291  97 RDFVQKALQSNLITEEDARIWLE 119 black tiger shrimp
ABQ12866  97 RDFVTKAIDQKLITAEQASAWIK 119 signal crayfish
ABP96982 100 KDFVYKALQNKLITENNAAAWLK 122 green mud crab
Q4U5R2   102 KDFIQKALKAGLVTEEEAKPHLV 124 blue shrimp
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