5CQ9,5CPC


Conserved Protein Domain Family
SopD
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pfam11047: SopD 
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Salmonella outer protein D
SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand.
Links
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Statistics
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PSSM-Id: 287960
Aligned: 2 rows
Threshold Bit Score: 606.584
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5CQ9_B   1 MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEK 80  Salmonella enterica s...
5CPC_B   1 MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINK 80  Salmonella enterica s...

5CQ9_B  81 IHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISR 160 Salmonella enterica s...
5CPC_B  81 IYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTW 160 Salmonella enterica s...

5CQ9_B 161 YPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGE 240 Salmonella enterica s...
5CPC_B 161 HPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGE 240 Salmonella enterica s...

5CQ9_B 241 VLFDMVHPTLSYLLQAYKPslSSDLIETNTMlFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLI 319 Salmonella enterica su...
5CPC_B 241 VAFSMMHPCISYLLHSYSP--FSEFKPTNSG-FLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILL 316 Salmonella enterica su...
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