Conserved Protein Domain Family
NCBP3

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pfam10309: NCBP3 
Nuclear cap-binding protein subunit 3
NCBP3 and NCBP1 form an alternative cap-binding complex in higher eukaryotes. NCBP3 binds mRNA, associates with components of the mRNA processing machinery and contributes to polyA RNA export.
Statistics
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PSSM-Id: 402087
View PSSM: pfam10309
Aligned: 76 rows
Threshold Bit Score: 49.8351
Threshold Setting Gi: 240131545
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EER31105                       83 IRPESLKIIG--VDNLSTKNIENYINYYINYnqieyeevdlitnelikgkkfqlkenqdcIDFKIEWINDESVNVTFRNI 160 Candida tropicalis MYA-3404...
ESO11593                      222 IRYNCIHLKG--TNDMSTKDVFDFFKLF--------------------------------PPSAIEWIDDESCNVVWLEE 267 Helobdella robusta...
WGS:AAGF:cds.TTHERM_00526420A 101 LRSEVLHVYG--VDFLSTQDIMSYFSRF--------------------------------NPEKIEWLNDSSCNVVFPSE 146 Tetrahymena thermophila SB210...
XP_018741539                   62 LRPIALHLEGepISQLSTSRLMAYVGHTGV------------------------------KAKGIEWINDTRCVVVFESY 111 Malassezia sympodialis ATCC 42132...
XP_001729822                   71 IRFDALHLEGgpITQLSTSRLMAFVAYSGA------------------------------HAKGIEWINDTRCVIVFNSY 120 Malassezia globosa CBS 7966...
GAC74175                       97 IRLDTLLIEGapITQLSTSRLFAYLTHYGA------------------------------QPLGLEWIDDQRCKVVFADE 146 Moesziomyces antarcticus T-34...
EMD41008                       87 IRNNAILLKGppIAHLPTSNIFAYAIHFDAH-----------------------------PDMALEWIDDTTCILVFPSR 137 Gelatoporia subvermispora B...
XP_018230055                   64 LRTEALYLKG--VEDMSTEDVEKYCITYYLA-----------------------------VSPLIEWIDDSSCNLVYPDA 112 Pneumocystis jirovecii RU7...
WGS:AFWA:PNEG_03294            64 VRPEALYLKG--VDQMSTDDVKKYCITYYPT-----------------------------VSPSIEWIDDSSCNLVYSDA 112 Pneumocystis murina B123...
CCG80919                       34 PRDNAIHLRG--TDDMSTSDVHKYLSLYTTE-----------------------------SKPRIEWIDDTSLNLVYYTA 82  Taphrina deformans PYCC 5710...
EER31105                      161 QDSNKVLKE 169 Candida tropicalis MYA-3404
ESO11593                      268 ITACRAMLQ 276 Helobdella robusta
WGS:AAGF:cds.TTHERM_00526420A 147 ELVEQAVQS 155 Tetrahymena thermophila SB210
XP_018741539                  112 AEAVNGLQR 120 Malassezia sympodialis ATCC 42132
XP_001729822                  121 ERAVEGLRH 129 Malassezia globosa CBS 7966
GAC74175                      147 RSARLALEY 155 Moesziomyces antarcticus T-34
EMD41008                      138 TNARAAFKH 146 Gelatoporia subvermispora B
XP_018230055                  113 STALSALSc 121 Pneumocystis jirovecii RU7
WGS:AFWA:PNEG_03294           113 STALSVLSS 121 Pneumocystis murina B123
CCG80919                       83 EDARIALAH 91  Taphrina deformans PYCC 5710
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