2XC7


Conserved Protein Domain Family
RNA_GG_bind

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pfam10258: RNA_GG_bind 
PHAX RNA-binding domain
RNA_GG_bind is the highly conserved U3 snoRNA-binding domain of PHAX (phosphorylated adaptor for RNA export) whose function is to transport U3 snoRNA from the nucleus after transcription. It is characterized by having two pairs of adjacent glycines, as GGx12GG.
Statistics
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PSSM-Id: 402048
View PSSM: pfam10258
Aligned: 55 rows
Threshold Bit Score: 65.6069
Threshold Setting Gi: 89309677
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XC7_A           11 VADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGG-LFIMNGS---RRRTPGGVFLNLLKNtpSISEEQIK 86 
XP_002278710     94 FVLDTCKRLKEKKSYLVWTAVGCLGVSALSDLVKEVDAIQACGG-QMTADGK---RSRTGGGILWSIIKV--R-DPNAYK 166 wine grape
XP_006853912     88 FVTNTCRHLGEKKSYLFWEAISCLGLSVLTDLIKEVDVIQDCGG-QLTADGG---RPRTGGGILWNIIKA--R-HPTAYK 160 Amborella tr...
Q9LTP9           94 FVRDTCRRLKEKKSYMIYTAVGCLGIAALSDLVNEVVAIETCGG-QVTADGT---RKRTSGGVLWNIIKA--R-QPEAYR 166 thale cress
XP_002516471     92 FVLDVCRRLKEKKSYMVYTAVACLGVSRLGDLVKEVDAVLSCGG-QMTADGG---RFRTGGGILWNIVKT--K-EPKAYQ 164 castor bean
jgi:OSTLU_15628 113 LARELAQQLDEPKVRLLARAINELGEAQVRAYVLEAATQQRHGG-EMTALGD---RRRTTGGIFWAIVRA--RTKPEVYD 186 Ostreococcus...
Q017X4          101 SARELAQALDEPKVRLLARAIDALGESTCRAYAEEAVATQRNGG-ELTANGE---RKRTTGGIFWSIVRA--RVDKETYD 174 Ostreococcus...
XP_003059403    144 aARDLCGDLGEPKESLMRRAIECIGIPMANDLAIEVGAIEGGGG-QMTADGS---RRRTPGGVFWALLKT--KVAKEDWD 217 Micromonas p...
XP_002500818    133 aARDLCGDLGEPKESLMRRALEVIGVVEANDIAIQVYRIEGEGG-QMTSDGA---RRRTPGGVFWALLRE--RVTKEEWA 206 Micromonas c...
XP_002502266    202 LAERICRRLREHKKHLVRLLIAQFGAALCEGALEETIRVEKNGGsFVTLDGAggvRRRLPGGVFIATVKS--RAPPVEFK 279 Micromonas c...
2XC7_A           87 DIFYIENQ 94 
XP_002278710    167 EIMKRGKE 174 wine grape
XP_006853912    161 EIVARGKE 168 Amborella trichopoda
Q9LTP9          167 EIMKKTKE 174 thale cress
XP_002516471    165 EIMKKTKE 172 castor bean
jgi:OSTLU_15628 187 IIYAEERE 194 Ostreococcus lucimarinus CCE9901
Q017X4          175 EIFAEERE 182 Ostreococcus tauri
XP_003059403    218 FIFEEERE 225 Micromonas pusilla CCMP1545
XP_002500818    207 DIFAEEKE 214 Micromonas commoda
XP_002502266    280 AVMKRaae 287 Micromonas commoda
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