5YMA


Conserved Protein Domain Family
Efg1

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pfam10153: Efg1 
Click on image for an interactive view with Cn3D
rRNA-processing protein Efg1
Efg1 is involved in rRNA processing.
Statistics
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PSSM-Id: 401962
View PSSM: pfam10153
Aligned: 124 rows
Threshold Bit Score: 73.696
Threshold Setting Gi: 209554659
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5YMA_A        52 IKKRARAIERLLaRdnLKLPANKQKELERELKAHKERIKD----IEFKRERSKXISKYHXVRFFERRKALRFAQQLERRL 127 Chaetomium ther...
XP_002966395  32 LGRQIRDIQRLLk---LNLSQEVRQAQESRLKQLKDN-HNpglqPSRVKVDRNISKRYKQVKFVERRKVERGLRRAEKEL 107 Selaginella moe...
ERN01445      43 LKNQIRSIERML-Lr-KNLPHEVKNAQEARLEELKKQKEI----ETRLALERKMSLRYRRIKFFERRKMERRIRRLEKLQ 116 Amborella trich...
XP_015690876  38 LKNQIRSTERLLr---KDLPNDIRVAQEKKLEELKRQQEL----QNQLAIQRTVQLRDRKIKFFERRKIERLIRRLEKQQ 110 malo sina
XP_009413918  38 VKNQIRSTERLLr---KDLPNEVRRAQEQKLNELKKQQEL----QTRLALEHKIRLRDRKIKFFERRKIERMIRRLEKQQ 110 wild Malaysian ...
XP_002284076  35 LKNQIRSTERILr---KNLPPEMREAQEKKLEGLKKQQEI----HTRLAVERKIFLRDRKIKFFERRKIERRIRRLEKQQ 107 wine grape
XP_006362193  38 IKNQIRSVERMLr---KDLPPEIREVQKQKLEELKKQQEL----QNRLAVERKIFLRNRKVKFFDRRKIERRIRRLEKQQ 110 potato
EFH65757      38 LKNQIRSIGRMIr---KDLPPEVREALEKKLDDLKKQQDI----HIRLAVERKIFLRNRKVRFFERRKIERSIRRLEKLQ 110 Arabidopsis lyr...
EFH39895      38 IKNQMRSVERFLr---KVSSFSLSEIRVPLIESLLKFQPFwrfaHTRLAVERKIFLRNRKIKFF-RRKIERSIRRLEKLQ 113 Arabidopsis lyr...
XP_002863064  38 IKNQMRSVERFLr---KDLPPEVRESLVEKLEDLKKQQDA----HTRLAVERKIFLRNRKIKFFERRKIERSIRRLEKLQ 110 Arabidopsis lyr...
5YMA_A       128 S-KATDPvEIAQLKADLHIAQVDIDYTKYFPFXEPYVSL 165 Chaetomium thermophilum var. thermophilum DSM 1495
XP_002966395 108 K-NAPDEkSKDEAAAKLQQLKQDLEYIKFFPKSEKYVSL 145 Selaginella moellendorffii
ERN01445     117 R-TTTDPhSEEQIARQLSKLREDLEYLRFFPKTEKYLSL 154 Amborella trichopoda
XP_015690876 111 R-SNGDDaS-----NKLSKLREDLEYVRFFPKNEKYVSL 143 malo sina
XP_009413918 111 R-ASSDHvSDERILDQLSKLKEDLNYVRFFPKTEKYVSL 148 wild Malaysian banana
XP_002284076 108 R-AASGQaQEAEVAEQLSKLKEDLEYVRFFPKTEKYVSL 145 wine grape
XP_006362193 111 R-TSSCKaQETEIAEQLAKLKEDLEYVRFFPKNEKYVSL 148 potato
EFH65757     111 RsTSGGHvQDAEIGGQLNKLKEDLEYVRFFPKNEKYVSL 149 Arabidopsis lyrata subsp. lyrata
EFH39895     114 R-TSSAHvGDTDIAEQLSKLKEDLEYVRVLPEKREYVSL 151 Arabidopsis lyrata subsp. lyrata
XP_002863064 111 R-TSSAHvGDTDIAEQLSKLKEDLEYVRFFPKNEKYVSL 148 Arabidopsis lyrata subsp. lyrata
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