Conserved Protein Domain Family
RPA

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pfam10134: RPA 
Replication initiator protein A
Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.
Statistics
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PSSM-Id: 401943
View PSSM: pfam10134
Aligned: 21 rows
Threshold Bit Score: 222.152
Threshold Setting Gi: 81626058
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6NDW1        122 KDDVNLMDVAPFTLGKNVRQG--VITYEMKD--CLITIEGGAEvGLATVFDYDIFLNMVSYLAEEvrryridDAKGlRP- 196 Rhodopseudomon...
WP_012279444   24 KDQRETMERPFFSLQKRKRLK--PIEYKSADgeVSVKVEAVPAyGMATIWDGDILIWAASALNRL-------KAEGrNDv 94  Caulobacter sp...
Q11KZ9         29 RDQRDLMERPFFSLAKAKRTS--PIHYEAGD--IRVEVFAVPEhGMATIWDADILIWAASQIVEA-------ANLGfQT- 96  Chelativorans ...
Q210T9         33 RDQRDLMERPFFSLSKSPRTK--PILYRAND--VEVQVFGMPKhGMATIWDADVLIWAASQIVRA-------ENLGlTT- 100 Rhodopseudomon...
jgi:Daci_2721  32 RDSQDLMAFPFFSLAKSRRTA--PIDFRASG--ITIRVEGTQEhGIATIWDADILIWAASQIVEA-------RDAGlRP- 99  Delftia acidov...
Q20ZK2         27 RDAQDLMAYPFFSLAKSKRVA--PIDFRAGK--IAIRVEAVPEyGMATIWDADVLIWAASQIVEA-------RDAG-LKt 94  Rhodopseudomon...
jgi:Xaut_0710  27 RDAQDLMAYPFFSLSKSHRVA--PIDFSAGA--VSIRVEAVPDhGMATIWDADILIWAASQIVEA-------RDAGlRT- 94  Xanthobacter a...
jgi:Pden_0132  29 RDSRDLMSWPFFSLAKSRRVV--PIDFHMGP--VSIRVEATPEhGMATIWDADILIWAASQIVEA-------RNQGlRT- 96  Paracoccus den...
WP_012049868   31 RDAQDLMAWPFFSLAKARRTA--PIDFRMGA--TWISVEAVPEhGMATIWDADVLIWAASQLIEA-------RDAG-RPt 98  Sphingomonadaceae
Q2RMM5         46 RDGRSIMDVAVFRLSKKDRRAgdVIRYELPDgyVQVSAGPA---GMASVWDYDLVLMAISHITEAanr--wrAGKGeKP- 119 Rhodospirillum...
Q6NDW1        197 SlppKMYRPTAAHLLKFSRRASGGRQYQEIEAALRRLSKTSI-----TITNLAGGK--RRQVDTrPLIGEHTIIssTN-- 267 Rhodopseudomon...
WP_012279444   95 P---RSLKVTAYDLLRSIQRDTGGKGYNDLKAALDRLATTTI-----FTSIR-AKK--GRDRRF-SWLDGWDVE--VDpi 160 Caulobacter sp...
Q11KZ9         97 S---RFLRFTPYQLLTAIGRQTGSRDYRLLKGALARLQSTVI-----RTTIRNGEH--WRRQQF-SWINEWGEC--TTr- 162 Chelativorans ...
Q210T9        101 S---RFFRFTPYQLLRGVGRPTGNQQYLLLKAALARLQSTVI-----ATTIRNGEH--WRRRQF-SWINEWEEM--STh- 166 Rhodopseudomon...
jgi:Daci_2721 100 S---RLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTV-----ATSIRETTG--RRLHRF-SWINEWKEL--ADa- 165 Delftia acidov...
Q20ZK2         95 S---RLMAATPYEILTFVGRGTGARDYDRLKAALDRLQSTTI-----MTSIRQPTE--RRRHRF-SWINEWKET--ADp- 160 Rhodopseudomon...
jgi:Xaut_0710  95 S---RLMMATPYEILTFIGRGTSLRDYRRLKAALDRLQSTTI-----STTLRQTAE--GRRHRF-SWINEWQER--TNh- 160 Xanthobacter a...
jgi:Pden_0132  97 S---RLMAATPYEILTFIRRGDSARSYLRLKAALDRLQSTTV-----ATSIRQPAE--RRRHRF-SWINEWKEL--LDd- 162 Paracoccus den...
WP_012049868   99 S---RLMVTTPHEILAFTRRGTGKASYERLKAALDRLQSTTV-----ATSIRQQHQ--RRRHRF-SWINEWREL--ADg- 164 Sphingomonadaceae
Q2RMM5        120 G---RLFRPHISEVLKFCRRDLGGKQKSNLVETCLRLSTTHVamrrsRTT--ESGKvvTVSEGE-SLIS-WYKV--VEsg 190 Rhodospirillum...
Q6NDW1        268 TGKVDQIEIRIPDWVYSSVVrsdKALpLLTLHPDYFLITSGLGRFIYRLARKAAGKDEA--RYSVAELHKRSGSSREPRK 345 Rhodopseudomon...
WP_012279444  161 TDKPIALKITLSDWVWEGIMn--EKS-VLTMHPDYFQISGGLEKAIYRIARKHAGDQDDgwTCRVSVLHEKTGSDSEPKE 237 Caulobacter sp...
Q11KZ9        163 DGRVEGMEFVLPDWLYRGVId--RSL-VLAIDPAYFRLTGGIERWLYRVARKHAGRQPAgwTFEIAHLHAKSGSQARVSD 239 Chelativorans ...
Q210T9        167 SGRVEGIEFVLPDWFYNGVId--RSL-VLTIDPAYFRLTGGIERWLYRVARKHAGHQRQgwVFEVAHLHAKSGSLARASD 243 Rhodopseudomon...
jgi:Daci_2721 166 KGTPLGLELILPDWFYAGVLd--AAL-VLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGgwQFDFQHLYRKSGSVARYYD 242 Delftia acidov...
Q20ZK2        161 HGRALGLELILPDWFYAGVLd--EAL-VLTIDGAYFSLTGGLERWLYRLVRKHGGHQTGgwSFDFYHLHAKSGSLSPPKH 237 Rhodopseudomon...
jgi:Xaut_0710 161 KGRPDGVEMIVPDWFYQAVLd--DAL-ILTIDRTYFDLTGGLERWLYRLVRKHGGRQKDgwRFDFRHLHQKSGSLSPFKR 237 Xanthobacter a...
jgi:Pden_0132 163 QRRPLGIELILPDWFYAGVMd--DAL-VLTIDRAYFDLKGGLERWLYRLVRRHGGRQPGgwSFDLRHLHLKSGSLSPFKR 239 Paracoccus den...
WP_012049868  165 NGRALGIELILPDWFYAGVLd--RAL-VLTIDRAYFDLTGGLERWLYRIVRKHGGRQSGgwSFDVPHLYLKSGVLSPLRR 241 Sphingomonadaceae
Q2RMM5        191 NGNPEYLEIEIAKWMYKEVIdgkNPD-VLTVHPDYFLIDLGIGRFIYRLARRAAGKGEArwAF--QTLFERSGSAGSSRE 267 Rhodospirillum...
Q6NDW1        346 FLFDLKEFVTRTQtfpMPDFDL 367 Rhodopseudomonas palustris
WP_012279444  238 FSRMLRKIVEVNE---LPEYDM 256 Caulobacter sp. K31
Q11KZ9        240 FAIDIRRIVARQP---LPGYRL 258 Chelativorans sp. BNC1
Q210T9        244 FALDIRRIAARQP---LPGYRV 262 Rhodopseudomonas palustris BisB18
jgi:Daci_2721 243 FAADLRALVVRQA---LPGYQL 261 Delftia acidovorans SPH-1
Q20ZK2        238 FAYDLREIVRRQT---IPGYRL 256 Rhodopseudomonas palustris BisB18
jgi:Xaut_0710 238 FAFELRDIIRRQP---LPGYTL 256 Xanthobacter autotrophicus Py2
jgi:Pden_0132 240 FAFEVRAIVQRQP---LPGYRL 258 Paracoccus denitrificans PD1222
WP_012049868  242 FAFELRGIVARQP---LPGYVL 260 Sphingomonadaceae
Q2RMM5        268 FARLLRKVIAAND---LPEYAL 286 Rhodospirillum rubrum ATCC 11170
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