Conserved Protein Domain Family
Plasmid_RAQPRD

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pfam09686: Plasmid_RAQPRD 
Plasmid protein of unknown function (Plasmid_RAQPRD)
This entry identifies a family of proteins, which are about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function of these proteins are unknown.
Statistics
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PSSM-Id: 401575
View PSSM: pfam09686
Aligned: 26 rows
Threshold Bit Score: 54.9701
Threshold Setting Gi: 407253291
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:HSM_1706            23 LAsTEQEQLAQAIKQLEAAKLSLQRAEKVAKASp---KT-----REYFNYSAIHSDIETVKKGIQQYINPSRALPRDPNV 94  Histo...
zhongguo:B5T_02124      34 DA-IQRRDLALLQQRLVDLQRVVDRLASRPVRHqtdaHAfragqRVFLDVDALHRDLQIVIDGIESYMAPPRLPPRRPTP 112 Alcan...
CBV43936                29 DA-IQRRDLALIQSQLEQITHVIDRLEARQDRQaspsMS------LYLDIPRLRRDVEAIADGIDGYLEPPRMPARQVPA 101 Halom...
WP_011795852            28 DDeLERERLSRIAAEIEQVQAMVSEAERSAPTG-----Q-----RVKFRYDWLLRDLEMLRQGIVTHVDTPR-QPRPVTP 96  Acido...
Q3JD95                  24 DAdAEREVLAKIIHELNALDPLIKRTEANADQD-----S-----HIRLRYDWLHQDLKQIRDGIQSHINFPRAQPRSFLP 93  Nitro...
Q3JDD7                  24 DAdAEREALAKIIHELNALETLINRAEVNADRD-----S-----RIRFRYDWLRQDLKQIKDGIQSHIDSPRAQPRSFPP 93  Nitro...
WP_014148568            24 DSdAERTALAKIKHEIESLKPLIAEAKAQADSD-----A-----RVQFQYDWLALDLDRMVLGIQEHLSAPSTQPRSFPP 93  Methy...
jgi:Metme_2021          21 DLdGERTALAKLMHELDGLKPLIAEAQGQADQS-----G-----RLQFQYDWLRLDIERIKLGIQEHLTAPR-QARSFPP 89  Methy...
PRJNA210423:M911_14265  22 sPdAERAHLAQLASELASLESLIDEAERHADPD-----A-----RIRFQYLWLRQDLDRVKQGIREHLQAPRAEPRQVPP 91  Ectot...
CBL47087                58 AAeMERAKLAEIVSALDQLVVQVDDASKTGASG-----------RVRFNYDALRRDLLGRRALIQRYVNGAWDEAHDLPP 126 gamma...
jgi:HSM_1706            95 lrtLSDDY 102 Histophilus somni 2336
zhongguo:B5T_02124     113 ---LSGDY 117 Alcanivorax dieselolei B5
CBV43936               102 ---LDGDY 106 Halomonas elongata DSM 2581
WP_011795852            97 ---LRGDY 101 Acidovorax
Q3JD95                  94 ---LRGDY 98  Nitrosococcus oceani ATCC 19707
Q3JDD7                  94 ---LRGDY 98  Nitrosococcus oceani ATCC 19707
WP_014148568            94 ---LKGDY 98  Methylomicrobium alcaliphilum
jgi:Metme_2021          90 ---LKGDY 94  Methylomonas methanica MC09
PRJNA210423:M911_14265  92 ---LRGDY 96  Ectothiorhodospira haloalkaliphila
CBL47087               127 ---LAkty 131 gamma proteobacterium HdN1
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