6JAT,3QXY


Conserved Protein Domain Family
Rubis-subs-bind

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pfam09273: Rubis-subs-bind 
Rubisco LSMT substrate-binding
Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex.
Statistics
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PSSM-Id: 401276
View PSSM: pfam09273
Aligned: 129 rows
Threshold Bit Score: 41.5864
Threshold Setting Gi: 255070695
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6JAT_A       351 YAMKAEVLAragipTSs-vFALHFTEPPISAQLLAFLRVFCM---TEEELKEhllgdsaidriftlgnsEFPVSWDNEVK 426
EEN61148     316 LERKIMFLA-----RNnliSDLTCGVTGVSPQLLIVLMVFLCkqdDEDVWEDlrtgrf-------------eedgplDVR 377 Florida lancelet
XP_019476324 252 KNAKLSILK-----DRdllENLTFGWDGPSWRLLTALKVLSLgedEFTCWRRal--------------lGDVISARNEQQ 312 turkey
XP_002188626 331 REAKVSILK-----DHdflENLTFGWEGPSWRLLTALKVLSLaadEFACWRRil--------------lGDVTSARNEQQ 391 zebra finch
XP_017206264 403 LNKKVAILK-----DHgfiENLTFGWDGPSWRLLTALKLLCLepeKFTFWKKvl--------------lGEVISDTNEKT 463 rabbit
XP_005202149 314 MNKKISILE-----DHdftENLTFGWDGPSWRLLTALKLLCLeaeEFTCWKKvl--------------lGEIISDTNEKA 374 cattle
AAI58670     313 VHKKLSILE-----DHgftGNLTFGWDGPSWRLLTALKLLCLeaeRFTSWKKvl--------------iGDVISDRNEKA 373 Norway rat
XP_007667927 314 MTKKLSLLK-----EHgflENLTFGWDGPSWRLLTALKLLRLgadEFTNWKKvf--------------lGEVISEANETK 374 platypus
XP_027785017 202 MNKKISILKdhgfie-----nltfgwDGPSWRLLTALKLLCLeaeKFTCWKKvl--------------lGEVISDANEKT 262 yellow-bellied ...
KAE8621515   252 MPKKWALLG-----ENdflGNLTFGLDGPSWKLLTAVKLLCLrpeEFTSWKKvi--------------lGSFVSDANER- 311 tropical clawed...
6JAT_A       427 L-WTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSV---------RAKMAIKLRLGEKEIL 476
EEN61148     378 A-RKVAGRLLSLRLRTYATTIEEDEGRLKEVTSP----------CGRLAVYCGMERKRLL 426 Florida lancelet
XP_019476324 313 A-LNITTKICHFLIEETQHVLLQ-ISQMKRDKENLk-------eQLTLVEALRLEDLKIL 363 turkey
XP_002188626 392 A-LGTAAKICQFLIEETQHVLLQ-ISQLKRDKENLk-------tHLALVEMLRSEDLKIL 442 zebra finch
XP_017206264 464 S-LDITRKICCDFIEETCSVLQK-ISQMKDDSVALl-------pQLALVETLWMEELQIL 514 rabbit
XP_005202149 375 S-LDVAQKICHYFIEETHAVLRK-VSRMKDEEVALm-------nQLTLVETLRTEELKIL 425 cattle
AAI58670     374 S-LGVAQKICSDFIAEIHSELRK-VSDMKERKGSLi-------sQLCLVEALRMEELRIL 424 Norway rat
XP_007667927 375 S-LALAVTLCSYFLEETRAGLQK-ISQMKREEVALr-------nQLGLVEALRLEELEIL 425 platypus
XP_027785017 263 S-LDVAQKICHHLLEESSAMLQR-VSHMKDEKVSLv-------sQLALVETLWREELKVL 313 yellow-bellied marmot
KAE8621515   312 DsLELVRKICFHLLDETSCALKE----ISLVRSQKlpdpaaaahHLALVEALRLEELEIL 367 tropical clawed frog
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