Conserved Protein Domain Family
Rap1-DNA-bind

?
pfam09197: Rap1-DNA-bind 
Rap1, DNA-binding
Members of this family, which are predominantly found in the yeast protein rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACACC region in the 3' region of the DNA-binding site.
Statistics
?
PSSM-Id: 401223
View PSSM: pfam09197
Aligned: 14 rows
Threshold Bit Score: 110.195
Threshold Setting Gi: 149386888
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_448440    320 KFTADEDYELAIAIKQQFYKDIYQLDPVTGQSLISDNDPPARVAKRQMMmdpnvqrgseppfskyrvgtrrgpIAREFFK 399 [Candida] glabrata
EEQ38841     226 RFTAEDDYNLCRDIIDHVLANQDADQL-----KVTDGSYEYPLNENKFS------------------------VSIVFFD 276 Clavispora lusi...
EDK39454     234 RFTAEEDYELCQAIVDFNRARFFGAADEHGIVRDETGKPKEFDLYGQLT------------------------VPISFFS 289 Meyerozyma guil...
Q6BU78       262 RFTALEDFNLCTELIEYSRLKYYEDLESGAVDKDEDGKPKPFDLYQEFT------------------------APVSFFA 317 Debaryomyces ha...
EDK44189     331 KFTPEDDYYLCQIVTNYNKSVAESKGLPFDPRKKTVPP-------------------------------------YSFFN 373 Lodderomyces el...
ABN66909     285 KYTAEDDYYLCTEAKKYILAKESAKDGGEGRGSGKLPELKVLLP-------------------------------YSFFS 333 Scheffersomyces...
CCD25687     524 KFTADEDYALAVSVKKQFYRDLYQIDPDSGQSLISAQDSPTAIARRNMTmdpnhipgsepgfkeykvndrkgpIAREFFK 603 Naumovozyma dai...
CAR27177     375 KFTAEEDYQLAIGIKKQFYRDLYQIDPDTGVSLISDEDSPTAIAKRNMTmdpnhvpgtepnfqdyrvsdrrgpIAREFFK 454 Zygosaccharomyc...
XP_001645851 363 KFTAEDDYNLAMGIKKQFYRDLYQVDPDTGESLILEDDSPVAIAKRKMTmmpnhipgtepnfqeykvnerrgpLAREFFK 442 Vanderwaltozyma...
CAH01014     301 KFTSEEDYNLAVAVKKQFYRDAFQRDPDTGASLIAEDDEPNIVAKRQLVmnteidpsevpsfekytvndrrgpLSREFFK 380 Kluyveromyces l...
XP_448440    400 QF---------------------TENHP--THTESAWRDRFRKFLLEYGVDKYIEYYETQKANNDEPEAMKNLTI 451 [Candida] glabrata
EEQ38841     277 EY---------------------ARLHP--QHSSSSWRDRYRKFARVYGLQKYRDYYLREKDSKEGPQPMKNLTS 328 Clavispora lusitania...
EDK39454     290 TL---------------------AKTNP--MHTPNSWRDRYRKFVSRYGAKKYIDYYDKVTASGGVPEPIKGDSP 341 Meyerozyma guillierm...
Q6BU78       318 MM---------------------AKNYP--SHSYHSWRDRYRKFVRQYGAQKYIDDYNRSIQNGETPEQMKNFTG 369 Debaryomyces hansenii
EDK44189     374 DM---------------------YRANH--RHTLHSWRDRYRKYITEGTMVEYMEHYEKCRREGKEPRLLMRIPP 425 Lodderomyces elongis...
ABN66909     334 NLcrpdrggqdevadsennpdkrNKKHIgqRHTLHSWRDRYRKFVGDGTIEKYIKSYE----ASENPKPLERRGV 404 Scheffersomyces stip...
CCD25687     604 SF---------------------ADENP--THTENAWRDRYRKFLLTFGVDAYIAYYEIERASGREPKPMKNLTN 655 Naumovozyma dairenen...
CAR27177     455 HF---------------------GESHP--THTENAWRDRFRKFLLSYGIDNYIYYYERELGHGNDPEPMKNLTN 506 Zygosaccharomyces ro...
XP_001645851 443 QF---------------------GEHYP--SHTENAWRDRFRKFLLSYGIDNYITYYETEKENGNEPEPMKNFTT 494 Vanderwaltozyma poly...
CAH01014     381 LF---------------------ALEVP--THSENAWRDRFRKFILPYGIDSYISYYEKCMEEGIEPESIKNMTN 432 Kluyveromyces lactis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap