3U60


Conserved Protein Domain Family
gp45-slide_C

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pfam09116: gp45-slide_C 
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gp45 sliding clamp, C terminal
Members of this family are essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. They adopt a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry.
Statistics
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PSSM-Id: 401163
View PSSM: pfam09116
Aligned: 3 rows
Threshold Bit Score: 138.566
Threshold Setting Gi: 75082220
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3U60_G   115 VTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVI-------NGFNKVEdsaltrvkYSLTLGDYDGENTFNFIINXANX 187 Escherichia virus T4
Q6WI75   117 EFDLKGEDLQRVKKASATLGLSDICVRTEAGSTAItlsatdaQGSSKHT--------FEINVGEADVDTEFKFFFKSERL 188 Vibrio phage KVP40 ...
EEB88694  26 IFNIDSDDFTKLTRAARTLSIDTLAITADDGKILI-------NGYNKVTdadlvnvlYSFECADYDGTAEFNFLVNMANM 98  Moniliophthora pern...
3U60_G   188 KXQPGNYKLLLWAKgkqGAAKFEGEHANYVVALEA 222 Escherichia virus T4
Q6WI75   189 NIVDQDYKVSIHPA---GISRFLGLSLEYFIATEA 220 Vibrio phage KVP40 Japan/Matsuzaki /1991
EEB88694  99 KMLSDDYKVMISSK---GAIKFEGKTSTYIGVLET 130 Moniliophthora perniciosa FA553
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