Conserved Protein Domain Family
Cyc-maltodext_N

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pfam09087: Cyc-maltodext_N 
Cyclomaltodextrinase, N-terminal
Members of this family assume a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N terminal domain to a distal domain in the protein. This domain participates in oligomerization of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate.
Statistics
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PSSM-Id: 401144
View PSSM: pfam09087
Aligned: 74 rows
Threshold Bit Score: 91.8402
Threshold Setting Gi: 504033430
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014218416    27 KVYPTHWWAGMkKKDTVQLLLHGNNVRK-EEIYMIpYAGVKLIRTDTVKNPNYLLLTLEISAlAKPGIIKFEKAtvltNY 105 Niastella kor...
EAP88107        10 RLEPPNWWADM-NLTSVQLLCYGENISD-YEVSSK---DITIVNVERTENPNYLFVNVNFEG-LSAGEYSFKFK----KK 79  Croceibacter ...
WP_014387359    22 RMEPPFWYEGM-NKSEVQVLFYGKNIAQ-NSVQVS--NNVVITNVTKTENPNYLFVTIDTKN-VKAQELQFTFS-----N 91  Flavobacteriu...
WP_014084851    20 RVEPPFWYANM-QNPEVQILFYGKNIAQ-NEVSVS--NNVIINNIRKTENPNYLFVTIDTKN-VAAQELTFSFS----KN 90  Flavobacteriu...
WP_013998329    23 RVEPPFWWTDM-RHSQLQIMLYGKEIAQ-FSVVSE----LPIVNITKTENPNYIFVTVDTQN-KSEGKYKISLL----NK 91  Capnocytophag...
jgi:Coch_0362   36 RVEPPFWWEGM-HYSQVQVLLYGKNIAQ-YNVESD----LPIVNILKTENPNYLFVTVDTKD-KKAGNYTISLL----QK 104 Capnocytophag...
kribb:DDD_0979  34 HIEPRFWWSGM-EHNEVEVMFHGPNIAKfDEVRSD----LTILNVRKTDNPNYLFVTFDMS--IEPNRYNINLCte-dCN 105 Nonlabens dok...
WP_014267424    42 KVDPPNWWAAM-PKPM--LLVRGEGFSG-AKFSLS-DASLHVEKTVVSANGHWAQVWLEASP-VKPETITLRAR-----R 110 Granulicella ...
tigr:ACP_2520   44 RLDPPNWWTHM-PAPM--LLLYGRNLKD-THITVQ-GRDVSIRRTHFSANGHYAFVWLADQN-NAPQTLQLKVS-----S 112 Acidobacteriu...
WP_013783997    61 dVYPPNWWVGM-EKPTVELMLHGDGVAN-YSASIN-ATDVTVVDSKRLDSENYLFVTLNTDS-AEAGRVVISLI----AP 132 Alteromonas n...
WP_014218416   106 PAGVSLFDFQLKARN 120 Niastella koreensis
EAP88107        80 GSKSFTKAFALKERD 94  Croceibacter atlanticus HTCC2559
WP_014387359    92 GKKAFKRNFEIKKRR 106 Flavobacterium indicum
WP_014084851    91 KKVAFTQKYELRKRK 105 Flavobacterium branchiophilum
WP_013998329    92 NKKVKSIDYELKKRR 106 Capnocytophaga canimorsus
jgi:Coch_0362  105 KKKVGSVRYELKARR 119 Capnocytophaga ochracea DSM 7271
kribb:DDD_0979 106 EGDTIAIVYDLLERQ 120 Nonlabens dokdonensis DSW-6
WP_014267424   111 NGQTAETKYTFAARR 125 Granulicella mallensis
tigr:ACP_2520  113 AQGETSFPFVLGKRK 127 Acidobacterium capsulatum ATCC 51196
WP_013783997   133 DGSSHDIDYALNARR 147 Alteromonas naphthalenivorans
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