Conserved Protein Domain Family
YccV-like

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pfam08755: YccV-like 
Hemimethylated DNA-binding protein YccV like
YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.
Statistics
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PSSM-Id: 400895
View PSSM: pfam08755
Aligned: 141 rows
Threshold Bit Score: 54.5104
Threshold Setting Gi: 307210178
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEA07893             608 LYYIGQLVKHRWWNYHGVIIGWDWSVQAPTQWINKVYQKY-STNDKltPHYLMLVHQdhsisskdfvsisNNTPRFLfaY 686 Cryptos...
zhongguo:SL003B_2238  11 KFKIGQVVRHRIYPFRGVIFDVDPTFNNTEEWWNAIPEDVrPSRDQ--PFYHLLAEN-------------EETEYVA--Y 73  Polymor...
Q92PT9                 7 KFEIGQVVRHRMFPFRGVVFDVDPEYANTEEWWNAIPQEIrPEKDQ--PFYHLFAEN-------------DESEYVA--Y 69  Sinorhi...
vbi:Avi_2374          23 KFGIGDIVRHKVFPFRGVVFDVDPEFANTEEWWNAIPAELrPSKDQ--PFYHLLAEN-------------AETEYVA--Y 85  Agrobac...
Q8U582                14 KFTLGEIVRHKVFPFRGVVIDVDPEYANTEEWWNAIPAEIrPERDQ--PFYHLLAEN-------------EETEYVA--Y 76  Agrobac...
Q2K8F1                 7 KFSIGEVVRHKVFPFRGVIFDVDPEFANTEEWWNSIPAEVrPSKDQ--PFYHLLAEN-------------DESEYVA--Y 69  Rhizobi...
jgi:Rvan_1683         16 RFAIGEVVKHRFFPFRGIIFDVDPEFANTDEWWLAIPEDIrPEKDQ--PFYHLLAEN-------------EETEYVA--Y 78  Rhodomi...
Q11HN3                 8 KFSIGQVVRHRLFPFRGVIFDIDPEFNNTEEWYQAIPAEVrPSKDQ--PFYHLLAEN-------------EETEYVA--Y 70  Chelati...
WP_008965329           8 KFQIGQIVRHRVFSFRGVIFDIDPEFNNTEEWWLSIPEEVrPHKDQ--PFYHLLAEN-------------AESEYVA--Y 70  unclass...
WP_012112025           8 KFRIGQIVRHRFYPFRGVIFDVDPTFNNTEEWWLSIPEEVrPRKDQ--PYYHLLAEN-------------SDTEYVA--Y 70  Parviba...
EEA07893             687 IPQIGLDLLEIKEDlikntseiINNPYFSLFFSKWDIN 724 Cryptosporidium muris RN66
zhongguo:SL003B_2238  74 VSEQNLVPDETGDP--------IRHPQVDEIFEEQSDG 103 Polymorphum gilvum SL003B-26A1
Q92PT9                70 VSEQNLVSDDSDRP--------IRHPQVDALFEKADAG 99  Sinorhizobium meliloti
vbi:Avi_2374          86 VSEQNLETDESGEP--------LRNPHINQIFVEEQAG 115 Agrobacterium vitis S4
Q8U582                77 VSEQNLVHDENDTP--------LRNPNIGRIFDKAPNG 106 Agrobacterium fabrum str. C58
Q2K8F1                70 VSEQNLVNDESGTP--------LRNPQIYQIFDQAPSG 99  Rhizobium etli CFN 42
jgi:Rvan_1683         79 VSEQNLLPDDSGEP--------LRHPQLDELFDELENG 108 Rhodomicrobium vannielii ATCC 17100
Q11HN3                71 VSEQNLLEDESGEP--------VRHPQLFEMFIQTGDG 100 Chelativorans sp. BNC1
WP_008965329          71 VSEQNLVPDESGEP--------IRHSQVAEIFIKDKSG 100 unclassified Bradyrhizobium
WP_012112025          71 VSEQNLLPDETGEP--------VRHPQVHELFGALKDG 100 Parvibaculum lavamentivorans
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