5OQM


Conserved Protein Domain Family
Rox3

?
pfam08633: Rox3 
Rox3 mediator complex subunit
The mediator complex is part of the RNA polymerase II holoenzyme. Rox3 is a subunit of the mediator complex.
Statistics
?
PSSM-Id: 400798
View PSSM: pfam08633
Aligned: 60 rows
Threshold Bit Score: 124.268
Threshold Setting Gi: 549044872
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5OQM_MM       26 QQPNPLQDLISVYGLDDISRQVARTNL-DGTKaVKLRKSYKNQIADLSGKFSTIpTRENGKGGQIAHIL----------- 93 
XP_003647795  27 EQPNPLDDLISVYGLQDISRQVARTNPd-GTKaVKLRKSYKNQIQDLSGKFSVIpSRENGRGGEVTPIVfqpintdmvpq 105 Eremothecium cy...
CAR22042      25 QEPNPLEDLISVYGLQDLSRQVARTNPd-GSKaVKLRKSYKNQISDLSAKFSVIpTRENGKGGDISHMLfqnnadmm--a 101 Lachancea therm...
CCK69436      22 QQPNPLDDLIALYGLNDLSRQVARTNMd-GSKaVKLRKSYKNQISDLSGKFTSIpTKENGKGGEIAQILfqnnpdmm--n 98  Kazachstania na...
CCD25216      34 QIPNPLDDLISIYGLDDLSRQVARSNTeTGIKaVKLRKSYKNQISDLSGKFTTIpTRENGKGGEISHILfqnnpdmm--n 111 Naumovozyma dai...
XP_003676671  25 QTPSPLDDLISVYGLSDLSRQVARTTPd-GGKaVKLRKSYKNQISDLSGKFNVIpNRENGKGGELAQILfqnnpdml--n 101 Naumovozyma cas...
P25046        26 QQPNPLQDLISVYGLDDISRQVARTNLd-GTKaVKLRKSYKNQIADLSGKFSTIpTRENGKGGQIAHILfqnnpdmm-iq 103 Saccharomyces c...
XP_001645888  21 QKPNPMDDLITQYQLDELSQQVARTNTd-GSKaVKLRKSYKNQISDLSGKFSTIpTRENGKGGEISHILfqnnpdmm--s 97  Vanderwaltozyma...
CCE65197      23 QVPNPLNDLISQYDLDDISQQVARTNTd-GSKaVKLRKSYKNQIAELSGKFSNIpTRENGKGGEIAQVLfqnnpdmm--a 99  Tetrapisispora ...
XP_003959939  28 QQPNPLDDLISVYGLDDLARQVARTNSd-GSKaVKLRKSYKNQISDISGKFNTIpTRENGKGGDIANVLfqnnqdmm--n 104 Kazachstania af...
5OQM_MM       94 ------FqnnpdmmiqppqqgqnMSEQQWREQLRnrdialfQ--------PPNFDWDLCSSVLSQFErSYPSEFANqnqg 159
XP_003647795 106 mrkengK----------------FSQEEWRTMFM-------Nrdha-lfeQPMMDWEMCAKVISQFErSYTGEFKNq--- 158 Eremothecium cy...
CAR22042     102 qvrrtpE----------------MTAEQWRQLMA-------Erdag-lfdGHNMDWEICQTVLSQFErSYPAEFQAn--- 154 Lachancea therm...
CCK69436      99 qvtrtpG----------------MSDEEWRDAQI-------HrdsalfqeGQGVDWNMCTDVLSQFErSYPTEFQNqp-- 153 Kazachstania na...
CCD25216     112 qihrntS----------------KNDNEWIEHAR-------NrdmdlfqsTKNMDWNVCNNVISQFEkSYPSEFQQq--- 165 Naumovozyma dai...
XP_003676671 102 qvnrskD----------------MSQEEYFNQLR-------DrdlnlfqqSNNLDWNVCENVLAQFGkSYPSEFQNqqd- 157 Naumovozyma cas...
P25046       104 ppqqgqN----------------MSEQQWREQLR-------Nrdia-lfqPPNFDWDLCSSVLSQFErSYPSEFANqnqg 159 Saccharomyces c...
XP_001645888  98 kvnrteD----------------MTKEDFEVAMA-------Nrdas-ffeNNNMDWEMCSNVLSQFErSYPTEFQNsl-- 151 Vanderwaltozyma...
CCE65197     100 nvtttqD----------------MTEEEYRTAMA-------Nrdma-lfgKNNMDWDMASTVLSQFDrSFPSEFQNvq-- 153 Tetrapisispora ...
XP_003959939 105 qvtrtpN----------------MTDQQYREALI-------Srdaa-lfqSPNLDWDMATNVLSQFErSYPTEFQNqa-- 158 Kazachstania af...
5OQM_MM      160 gaqapFDIDDLAfdldgtgk------sqsgsnsgNN--SKKRK-NKSSGSsmatpTHSDSHEDMKRRRL 219
XP_003647795 159 ----gFEVDDLAfdldgsgsntngvggsggsggaSK--SKKRK-SKSNGSsmatpNSDI-QDDIKRRRL 219 Eremothecium cymbalariae D...
CAR22042     155 ----gFQAEDLAfdldgs---------------gntlkSRKRK-NKSSGSsmatpNSDL-QDDMKRRRL 202 Lachancea thermotolerans C...
CCK69436     154 ----gFQVEDLAfdldgs--------------lkssnsAKKRK-NRSNGSsmatpNSDMTQDDLKRRRL 203 Kazachstania naganishii CB...
CCD25216     166 ----qFNVDDLAfdldgtgk-------nngnipgSVgnNKKRK-NKSNGSsmatpNSDVQQEDLKRRRL 222 Naumovozyma dairenensis CB...
XP_003676671 158 ---ngFVVDDLAfdldgtgk------atsnnvnnPN--GKKRK-NKSNGSsmatpTSDV-QDDLKRRRL 213 Naumovozyma castellii CBS ...
P25046       160 gaqapFDIDDLAfdldgtgk------sqsgsnsgNN--SKKRK-NKSSGSsmatpTHSDSHEDMKRRRL 219 Saccharomyces cerevisiae S...
XP_001645888 152 ----gFAIDDLAfdldg----------------tgkanPKKRKvNKSNGSsmttpNSNE-TDDLKRRRL 199 Vanderwaltozyma polyspora ...
CCE65197     154 ----gFNIDDLAfdldg----------------tgrsnSKKRKvNISSGSsmttpNGND-IEDIKRRRL 201 Tetrapisispora phaffii CBS...
XP_003959939 159 ----gFQVDDLAfdldgt---------------gkainSKKRK-NKSNGSsmatpNSDV-QEDLKRRRL 206 Kazachstania africana CBS ...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap