3W5M


Conserved Protein Domain Family
Bac_rhamnosid_N

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pfam08531: Bac_rhamnosid_N 
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Alpha-L-rhamnosidase N-terminal domain
This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
Statistics
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PSSM-Id: 400715
View PSSM: pfam08531
Aligned: 21 rows
Threshold Bit Score: 195.599
Threshold Setting Gi: 81443028
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3W5M_A  314 KKVSRARLYATALGLYEAHLNGRRVGRDQLAPGWTDYRKRVQYQTYDVTSSVRP-GANALAAYVAPGWYAGNVGMF---- 388  Streptomyces avermi...
Q5LID7  167 KEVASARCYISGLGYYRLSFNGKAVNDHALDPGFTDYSKRVLYLTYDISGLLRH-GKNCIGVQLGNGWFNEQTPAV---- 241  Bacteroides fragili...
Q9RK18  408 GRVARARLHISGLAYYEAEINGRRVGDQVLDPGFTDYDETVLYAVHDVTELLRS-GENAIGVAVGRGFYGMTTPNV---- 482  Streptomyces coelic...
Q9RJU1  360 KRVRSARLYIAGLGVYDATVNGEPVGDAVLEPANTDFAERVQYATYDVTDRLRT-GANTLGVALGNGMSNVVSTADry-- 436  Streptomyces coelic...
Q5ATB5  170 KRVEKVVIFASGLGHFNLFVNGKPASTHVLDPGWTNYHRTVQFVGYNVTPQWSE-KENVIGAHVGNGFYAGDQGDRffwp 248  Aspergillus nidulans
Q8A0E5  174 GELATTFLYVNSLGYHEVYVNGKKVTENVLTPAVSQLNKRSLMVTYDVSSYLKE-GENDLLIWLGQGWYK---------- 242  Bacteroides thetaio...
Q5FJ31  131 KQIKSARLYSTTLGVYEVDLNGVKVGNEFLAPGFTNYDKIVQLQTYDVTKLVTKnSNNELVFSVGDGWYKGNLGFDgg-- 208  Lactobacillus acido...
Q9A9K2  317 KPPTQARLYVSALGGYRIWLNGRRVGDDELQTEPAAYRRHVPYRAYDVTDLLRD-GENVVGLIVGDGTFASYQApd---- 391  Caulobacter vibrioides
Q8A8Z8  170 KKIVEATAYVCGLGFYEFSLNGKKIGDSEFAPLWSDYDKSVYYNTYDVTEQLQD-GENVVGILLGNGFYNVQGGry---- 244  Bacteroides thetaio...
Q8A904  175 KEIKRATVHIAGMGLYELFINGQRIGDQVLAPAPTDYRKTILYNTYDVTSQLQQ--ENAIGVTLGNGRFYTMRQny---- 248  Bacteroides thetaio...
3W5M_A  389 --G---PHQYG-ERPALLAQLEVEYA-DGTSERI-TSGPDWRAA-SGPIVSADL----LSGETYDARKETAGWTSPGFDD 455  Streptomyces avermi...
Q5LID7  242 --WhfhEAPWR-KRPQMIAEIHLCYT-DGSKDII-TTDTSWKTS-TGPLLFDNL----YVGSFYDARLEQKGWDTELFDD 311  Bacteroides fragili...
Q9RK18  483 --WnwhRAPWH-GEPRLLAQLEIDHP-DGTRTTV-ATDGEWRIT-EGPTLSNSL----YAGETYDARRAPEGWSRAGFDD 552  Streptomyces coelic...
Q9RJU1  437 -----rKLYGNlSDPKLIARLEVTLA-DGRVRTI-TSGDDWRTT-LGPTTASNW----YGGEDYDARREIPRWDEPAGDR 504  Streptomyces coelic...
Q5ATB5  249 myEdntYVRYG-NELCFFAEIHVHYD-DGSHETI-ISDPSWKVR-KSATTLANI----YASEDHDRRGYPFGWDTPGYDD 320  Aspergillus nidulans
Q8A0E5  243 ------KTTFGaAYDGPLVKAELNMLrNGKWEVLtATDTSWRGReSGYSDTGNWcalqFGGERVDGRIVPTDFSTYSLDK 316  Bacteroides thetaio...
Q5FJ31  209 -----qTNIYG-DKKSILAELHVTYT-DNSEQVI-STDSSWLTT-EGKIIKSSI----YYGEDIDDTKDILDWSSV---- 271  Lactobacillus acido...
Q9A9K2  392 -----gRYAYGpGPRRVRLFLESRDS-GDRVERV-ATDGEWRHA-LSPVLMSEI----YAGEDHDLRLWPRGWAEPGFDD 459  Caulobacter vibrioides
Q8A8Z8  245 -----rKLQISfGPPTLLFELVINYE-DGTRETI-RSDHEWKYD-LSPITFNCI----YGGEDYDARREQKGWNQVGFND 312  Bacteroides thetaio...
Q8A904  249 ----kpYKIPTfGYPKLRLNLIVEYA-DGSKETI-ATNTSWKLTtEGPVRSNNE----YDGEEYDARKELGNWTQTDYDD 318  Bacteroides thetaio...
3W5M_A  456 RAWLAVRG------ADNDVpeqIVAQVDGPVRIAK 484  Streptomyces avermitilis MA-4680 = NBRC 14893
Q5LID7  312 VSWQHAKL------TAAPAp-lIEAQKMPSITTad 339  Bacteroides fragilis NCTC 9343
Q9RK18  553 SGWRSAGV------REAPGg-tLRAQPHDPIGIVD 580  Streptomyces coelicolor
Q9RJU1  505 RGWRHAVAvagpgtADRPAl--LSARETEPIRVVE 537  Streptomyces coelicolor
Q5ATB5  321 STWASAKP------LTGPRg-kLRYQSQPPVILHN 348  Aspergillus nidulans
Q8A0E5  317 MKWYPVVE------VNVPRh-iVSPQMCEANKIHQ 344  Bacteroides thetaiotaomicron
Q5FJ31  272 ------VI------LNKSTs-iVRDRLSLPIMKKE 293  Lactobacillus acidophilus
Q9A9K2  460 SGWSRVWT------APPPEg-aPCALLSEPIRETR 487  Caulobacter vibrioides
Q8A8Z8  313 SHWRPVVV------QEAPKg-vLRSQMAPPVKIME 340  Bacteroides thetaiotaomicron
Q8A904  319 TKWMPAER------VSIPSg-tLRAQMMPGMKVTE 346  Bacteroides thetaiotaomicron
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