6VVO


Conserved Protein Domain Family
RFC1

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pfam08519: RFC1 
Replication factor RFC1 C terminal domain
This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyze ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo.
Statistics
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PSSM-Id: 400703
View PSSM: pfam08519
Aligned: 144 rows
Threshold Bit Score: 77.2248
Threshold Setting Gi: 166977383
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6VVO_A                   362 ICDGDLVDSQIRS--KQNWSLLPAQAIYA----SVL-P-------GELMRGYMTQFPTFPSWLGKHSSTGKHD-RIVQDL 426 
A0CPS3                   694 LADADVLNSKVR---SQMWGLMPNVGFLS----TMY-P-------TQILKGNLLSKVNFPQMLGRISSENKIK-RQILEV 757  Pa...
XP_002995454             418 ISSGDVVEKLIRGs-TQEWSLLPLHGFFT----VVL-PtkdkalfK---------GIDFPSWLGQNSRYLKHQ-RIIKEV 481  No...
Q8SRT8                   389 ISLGDVVEKLIRGv-SQDWSLAPLHAVYS----VVV-PtkgrhlmK---------KLEFPSWLGQNSKHSKAE-RILHTV 452  En...
XP_007604785             386 ISMSDIIDSRIHGt-EQEWSLMPYHAFFS----CVY-PlhgrlmhK---------RLDFPLYLGQYSKFGKNN-RLLTEI 449  Vi...
WGS:AAFB:cds.EHI_158610A 522 fAIGDIFQNVVNK--TQNWKLMPITGIFKvclsTYY---------GQTTNPGM--KVMFPKTLGKISKRGGNQtRLLMLT 588  En...
ELQ75739                 326 ISLAD---TYLRKmgSNDWSLLNQYAVFG----ALI-P-------AQNIKINR--RIEFPKILGNTSKGNKHN-KIIQTF 387  Tr...
EPR79382                 385 ISMGDIVDGIRRT--TMDWSLLPLHGFFS----TAL-P-------TQTVLK----KIEFTKFLGKLSSTNKNK-RVINKI 445  Sp...
XP_001322740             500 MSDGDTVQTILNQ--DQNYDLLIPMGIIG----CVTpPavapvkvTSNMR--------FPECYLRASKMNKNN-RLMQEF 564  Tr...
XP_001300705             436 MAIGDVLNNDIYQ--NMEFQTLPAHGFFSavapSILsP-------GKDWGG----MAKFPMYFGKNSRHKKLE-RYINEM 501  Tr...
6VVO_A                   427 ALHMSL-RTYSSKRTVNMD-YLSLLRDA-LVQPLTSQGvDG---VQDVVALMDTYYLMKED-FENIMEISSWg------G 493 
A0CPS3                   758 KEAFAQqTYLTNTKAIKFQ-YIEPYAFI-IIQSLAS---AGlscIDEVVSLLRNYNLNIQQfEECIVGSLALfpkrdlmT 832  Pa...
XP_002995454             482 KRHVSK-YVNSGLENFRLY-DSYIIFLE-ILNFLKEn------nVKSAIDLLKEYDLIKDD-FVNLSELLl--------D 543  No...
Q8SRT8                   453 SMHSSC-KIRNNPEELRKC-SSGLILQK-YAYYLKTh------sIDKAISNIVDYDMTKED-IVGLAEIIp--------G 514  En...
XP_007604785             450 CYHF---RPKVTRKSFRLF-VGELIFKR-FTNGLQEg------nIGQSIKVLESTDLLKED-AINLGELIGSns------ 511  Vi...
WGS:AAFB:cds.EHI_158610A 589 N------KTPGKFMDSRGYaAIPMMYIRnTIIRLMSi------dVKQAVAVALKFGLEKEI-WDEMVKIGISlekvelfK 655  En...
ELQ75739                 388 HFHI---LSRCDPTEFYFY-DMPLLIKT-YIANLNDg------hIDKNVQFLVENKLLKSDcDDGMSVYGWEk------- 449  Tr...
EPR79382                 446 FHHLFK-VNNSSIEETMLY-YFPVLNQYyITQMTHGD-------TEDIINLLLKNFLLKED-LDEIYTLFRSt------- 508  Sp...
XP_001322740             565 TTRSAR-VLQSTPSTMRES-TADILSAK-MQNYIQDQN------TQELKNLLELLEITPED-AENLKSIVSFqsk-ekgK 633  Tr...
XP_001300705             502 GRRISR-TTNLPTSEINDT-TVPLLLMR-AKNYLSG----RkpnIDGFLDMLDSFEMTLDD-YEHLGELYTY-------G 566  Tr...
6VVO_A                   494 KPSPFS---KLDPKVKAAFTRAYNK 515 
A0CPS3                   833 ---------EIASQVKASLNKAMKQ 848  Paramecium tetraurelia
XP_002995454             544 GQALYK---EVKTKTKGDFTRQYNK 565  Nosema ceranae BRL01
Q8SRT8                   515 GADLFK---GIERKVKLLLDREYKK 536  Encephalitozoon cuniculi
XP_007604785             512 -------yqSISAKYKMALTREYNK 529  Vittaforma corneae ATCC 50505
WGS:AAFB:cds.EHI_158610A 656 ---------SVSTANKTKFTKELKQ 671  Entamoeba histolytica HM-1:IMSS
ELQ75739                 450 ---------NVSTKGKSAMTRAYKK 465  Trachipleistophora hominis
EPR79382                 509 --------iKFDSKIKSKLTREYKK 525  Spraguea lophii 42_110
XP_001322740             634 SASQDD---KASQKFVTTFQKKFSK 655  Trichomonas vaginalis G3
XP_001300705             567 PPAMAAkslPGTPAVKGAVTRGYRQ 591  Trichomonas vaginalis G3
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