Conserved Protein Domain Family
GIIM

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pfam08388: GIIM 
Group II intron, maturase-specific domain
This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing.
Statistics
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PSSM-Id: 400613
View PSSM: pfam08388
Aligned: 89 rows
Threshold Bit Score: 54.1169
Threshold Setting Gi: 81852717
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q92Y56        377 AANLRHKVKQLTqRDSISVSLGEKLRGVNAITSGWANYYRYCvGAGRVFVALDWYIGLRLYCWLHKKRPKATpselwgsk 456 Sinorhizobium ...
jgi:Pden_4539 313 LKSFRRRVRNWGlQRRSDKGLIDLARMFNRQIEGWIGYFRCF-YKSALYSTL-RLIDAHLVRWVMRKYKR---------- 380 Paracoccus den...
jgi:Paes_0629 313 GKRIRQEVRSWKlHLRSDKALEDLARMFNAHIRGWVNYYSVF-YKSALYPTL-RHIDRKLTLWATRKFKR---------- 380 Prosthecochlor...
Q8TH39        313 KKSMQQEIHNWRmHLKPDLTLEDLSHMYNPIVRGWVNYYGLF-YKSELYCVL-KHMNRALTRWALRKYKK---------- 380 Methanosarcina...
Q2LRA6        211 RKEINREICRRHiQLKNDKTLDDLSNMFKAKIRGWIAYYGRF-YPSEIGWIW-KNINGYLIRCVRRKYKR---------- 278 Syntrophus aci...
WP_011745321  311 LKTMRRTIRSWHlQLKSDKQIEELSKAIDPVLRGWKNYFCRF-NASAMKPVW-HHVNLYLTRWLMRKYQK---------- 378 Chlorobium pha...
jgi:Ppha_0963 311 LRHMRQTIRRWKlQLKNSLELADLSAQFNPILRGWKNYYTRF-YGSAMAPVW-QHMNYYLAHWMMRKYKQ---------- 378 Pelodictyon ph...
WP_012506644  311 LKAMRQTIRGWHiQLRCDRNLQELAARFNAVLRGWHCYYGKF-HGSAMSVIW-RHMNMYLARWLMRKYKH---------- 378 Prosthecochlor...
Q8A4I4        315 MKRINETMRSWHlNRHSNLTLEHLASDINPIVRGWMTYYGKF-YPTRLKWFM-QTLNGRLARWVMCKFER---------- 382 Bacteroides th...
Q327G1        276 MRKITETIKKWRiHRSTAESLLDFARRYNAIVRGWIEYYGKF-WSRNFNYRLWSAMQSRLLKWMQSKYRLSN-------- 346 Shigella dysen...
Q92Y56        457 qpsRRRATRR---VW 468 Sinorhizobium meliloti
jgi:Pden_4539 381 ---FKQRPRQar-lW 391 Paracoccus denitrificans PD1222
jgi:Paes_0629 381 ---LKGHRRRathVL 392 Prosthecochloris aestuarii DSM 271
Q8TH39        381 ---LSGHKRRar-yW 391 Methanosarcina acetivorans
Q2LRA6        279 ---FASHKKQar-cY 289 Syntrophus aciditrophicus SB
WP_011745321  379 ---YAGRLKRa---V 387 Chlorobium phaeobacteroides
jgi:Ppha_0963 379 ---LSGHKTRasrKL 390 Pelodictyon phaeoclathratiforme BU-1
WP_012506644  379 ---LAGHKTRatkAL 390 Prosthecochloris aestuarii
Q8A4I4        383 ---YRHRFYPaq-eW 393 Bacteroides thetaiotaomicron
Q327G1        347 ---RKAQRkltlvrk 358 Shigella dysenteriae Sd197
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