3AYH,5FJ8


Conserved Protein Domain Family
RNA_pol_Rbc25

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pfam08292: RNA_pol_Rbc25 
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RNA polymerase III subunit Rpc25
Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III.
Statistics
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PSSM-Id: 400543
View PSSM: pfam08292
Aligned: 23 rows
Threshold Bit Score: 111.606
Threshold Setting Gi: 122077652
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3AYH_B           83 EVMLGKIKSCSEEGIRVTISFFDD-IFIPKDMLFDPCVFRPDERAWVWKIEged-----------gsEGTELYFDIDEEI 150 Schizosaccha...
XP_011389326     83 EVLTGKIKSSDEAGIRVSMGFFDD-IYIPYHLIPKPCAFDHQERAWFWLYEarteqia--adpllsqPEERMYLDTAEAV 159 Ustilago may...
Q4CPV8          120 ARLRATISAQTREGIFLTLEFFQFvFFVPGDLLVAPSSYHEEKKCWVLHVEeeeeddveegeekgalESALNPYENGDEV 199 Trypanosoma ...
Q7PZW7           83 DVITGKIRSCSREGVHITLGFFDD-ILIPPSALQHPSRYEEAEQAWVWEYPle------------dgNTHDLYMDIGENI 149 Anopheles ga...
Q9VTL6           83 TVITGKIRNCSREGVHVTLGFFDD-ILIPHAALQHPSRFDEAEQAWVWEYPle------------dgAKHDLFMDVGEPI 149 fruit fly
XP_001630352     83 EILKGRIRSCNHEGVQVSMEFFDD-IIIPYENLQQPSKFDEDEQVWVWEYTqe------------gdETHSMFMDVNEEI 149 starlet sea ...
jgi:OSTLU_15619  85 EVIEGTLLSADAHGAHVSIGFFKD-IFVPPTNMQAPSEYDDDSKVWMWDY-----------------DGELMEMKVGERF 146 Ostreococcus...
Q23645           83 EVIEAKVIGSSRQGLCLTIQFFED-IFVPAEKLPEPHVFEEEGQVWYWEYAqed-----------gePPAKLYMDPGKIV 150 Caenorhabdit...
Q382L2          107 ARVRATIGAQTREGIFLSLDFFQFvFFVPGDQLIAPSFFDEGNQCWMLRVDdg------------tdEDAVNPYEKGDEV 174 Trypanosoma ...
Q557J3           82 EVLEGVIKKSSRQSIQISLGFFHE-IYLNPIELPNPSNYNQEEGLWYWEW-----------------NENQLFFEDGGRV 143 Dictyosteliu...
3AYH_B          151 RFQIESEDFv-dISPKRNKNA-----------------------TAITGTEALESVSPYTLIASCSRDGLGIPAWW 202 Schizosaccharomy...
XP_011389326    160 RFTVESDAFw-dSEPGPGAATrsads-------------atqnaLHQKEHTTKETKPHYSITASIAGSGLGLVSWW 221 Ustilago maydis 521
Q4CPV8          200 IVKVEHVIV---RELVDFHSNvgtnsqnin------niiinsgvSADGKEGSPTSQSPMEVRGSFVGTGLGPVLWF 266 Trypanosoma cruzi
Q7PZW7          150 KFRVSGEVFe-eSSPIGPPDQevpsss-----------tgastsGGAGSSGQESNKTPYRIVAAINESGLGLLSWW 213 Anopheles gambia...
Q9VTL6          150 KFRVSREIFe-eTSPIGPPKTeaqtqq------------gastsAAVASATSQEVKTPYRIIGAINESGLGVLSWW 212 fruit fly
XP_001630352    150 RFRVVDETFt-dVTPSGPEAAsk--------------------dQIATKDDQEIRKSPYTITGSISEPGLGLLSWW 204 starlet sea anemone
jgi:OSTLU_15619 147 RFKVVAVRFp-eSPKTAEELAslt-----------------resGAAPRDGGDAAFAPMLVIADINEDGLGLCSWW 204 Ostreococcus luc...
Q23645          151 RFRVTEIIFk-dLKP-------------------------------ELTHEERKTEKSMEIKGTMASTGLGCIGWW 194 Caenorhabditis e...
Q382L2          175 VVRVDRVIV---RDPVDLHRAegargstsnamgnadgtrsatggLKDSGREPQVEKWPMEVYGSFVGTGLGPVVWF 247 Trypanosoma brucei
Q557J3          144 RFKIDQVEFnpeISQPAPSPKnvnteamds-----yslreykekQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214 Dictyostelium di...
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