1YUA,1YUA


Conserved Protein Domain Family
Topo_Zn_Ribbon

?
pfam08272: Topo_Zn_Ribbon 
Topoisomerase I zinc-ribbon-like
Some Proteobacteria topoisomerase I contain two zinc-ribbon-like domains at the C-terminus that structurally homologous to pfam01396. However, this domain no longer bind zinc. Indeed, only one of the four cysteine residues remains.
Statistics
?
PSSM-Id: 400528
View PSSM: pfam08272
Aligned: 52 rows
Threshold Bit Score: 43.0129
Threshold Setting Gi: 119864262
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1YUA_A        81 GNKTMVrfSRK-TKQQYVSSekDGKATGWSAFYVDGKWVE 119
Q0VQT8       776 PMPHLQ--CQK-VDDHYLLR--DGASGLFLAASKFPKNRE 810 Alcanivorax borkumensis SK2
ABM03739     766 dLPELE--CEQ-SDAHFILR--DGASGIFLAANTFPRSRE 800 Psychromonas ingrahamii 37
P57371       753 PFPELL--CKQ-SDAWFVLR--EGISGIFFAANTFPKSRE 787 Buchnera aphidicola str. APS (Acyrthosiphon pisum)
Q15TB6       765 dLPELE--CTK-SDAHFVLR--DGASGIFMAAHNFPKSRE 799 Pseudoalteromonas atlantica T6c
Q6LPB7       761 HLPEIP--CTQdSNAYFVLR--DGASGLFMAASTFPKSRE 796 Photobacterium profundum
1YUA_A        14 PLPELP--CEK-SDAYFVLR--DGAAGVFLAANTFPKSRE 48 
RZA23825       8 KMPELK--CEK-VNDTYVLR--DGASGLFLAASQFPKNRE 42  Proteobacteria bacterium
WP_013261363 774 pMQHLR--CQK-HDDFYLLR--DGASGLFLAASQFPRHRE 808 gamma proteobacterium HdN1
WP_120665518 769 dMPKLR--SQK-FDDHYVLR--EGAAGLFLAASKFPKVRE 803 Moraxella catarrhalis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap