6D6Q


Conserved Protein Domain Family
PMC2NT

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pfam08066: PMC2NT 
PMC2NT (NUC016) domain
This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components.
Statistics
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PSSM-Id: 400418
View PSSM: pfam08066
Aligned: 136 rows
Threshold Bit Score: 49.4871
Threshold Setting Gi: 674576004
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6D6Q_J         48 TKASGGLPq-fGDEYDFYRSF-PGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRs---kVTEledKFDLLVDANDVIL 122 
EFO27811       28 VGEANALPm-rTEGYELYASF-PLYTNLMMEQQRRITVMLRELLRNAGCRIPIpar--indLDE---FLDRIVEANDNIC 100  eye worm
ESO01119       26 RKHVDSLPv-sGSDFECWTSY-DEFTHLTNHHGKRILNLIQLILSKHNLKTDIsse--lldVEE---RYDLLTDACDQLM 98   Helobdella ro...
EFN66407       25 IKAANNLPa--TDNFNYYVCLkPSLNEARNKDLRRILATMQMIIRTTGGSSNIes----adVDD---KFDLLLETNDHLL 95   Florida carpe...
EGK96928       56 MKAANAMPs--GRSRDLYAAH-PEFIKIMDTRANQVLHIIANILQLQGVQGNIlh----rdPDE---RLEMIHDFNDNIL 125  Anopheles gam...
ETN62570       54 MQACNAMPs--GKSRDLYSSH-SKFIEIMDSHADNVLGIISGILQMQGIKGHIel----rdPEE---QLEMLQEFNDNML 123  Anopheles dar...
EFX79910       27 TKYSNELPs-sGSDWDYYQSY-PAYASAMKEFGGRITNVMTKIYGHYGLTGKVgk----ldLEE---QMELVSDNNDILM 97   common water ...
7_pfamImport    4 VKWSNCFPa--DKQYSSYATI-PEFKNTMKEQELELQNIIQKLLHYCGSKRSIaa----qcPDD---KFDLIIDMNDILL 73  
CDS38294       30 VKFSHEFPtnsTPAYTYYNDF-AEYRAVMNGNSSKILTTIQDVIDELDGKANIMDApqpksLEE---KFNTIVCINDEII 105  Echinococcus ...
XP_016843962   14 IKASNSLPs--ADNFNYYTCF-PTFNEIRNEQIKKILNSMQGIVERAGIAGNIkq----rdIEE---KFDLILESNDIYL 83   jewel wasp
6D6Q_J        123 ERVGILLDEASG 134 
EFO27811      101 ERAGILLDLLQK 112  eye worm
ESO01119       99 DRIGTNLDDASn 110  Helobdella robusta
EFN66407       96 DQANILMDEESG 107  Florida carpenter ant
EGK96928      126 ERIHSNLDEMAG 137  Anopheles gambiae str. PEST
ETN62570      124 ERIHSNLDEMAG 135  Anopheles darlingi
EFX79910       98 ERINLSLDEAAG 109  common water flea
7_pfamImport   74 ERVSKNLHEMDG 85  
CDS38294      106 DRVTAVMDKeef 117  Echinococcus multilocularis
XP_016843962   84 DQAGLCMDEASG 95   jewel wasp
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