Conserved Protein Domain Family
PDDEXK_9

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pfam08011: PDDEXK_9 
PD-(D/E)XK nuclease superfamily
This family contains many hypothetical bacterial proteins. It has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches. DUF1703 has the predicted secondary structure pattern of the restriction endonuclease-like fold core and contains an additional beta-strand at the C-terminus.
Statistics
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PSSM-Id: 400391
View PSSM: pfam08011
Aligned: 39 rows
Threshold Bit Score: 87.3129
Threshold Setting Gi: 75543075
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2FLS6 455 VNENFYRTTFYELCSrylSNWFIWNIERSYPQGRSDLEFVgky-herFANLRWVIEFKyfsNTEFSkMKCKiediplkeE 533 Methanospirillum hung...
Q8RIE6 464 KGEKVYHSLFLGMLIw-lRDKYEVKSNGERGHGRYDAMLIpl----dKVRPAYVFEFKvskTIKALnAKAE--------E 530 Fusobacterium nucleat...
Q2FUA3 456 LPEAVFHAFVLGLLAn-lISVYDVRSNAESGLGRADILMIpk---ttRYQTGYVIEFKsiyPNDDIeKSAQ--------E 523 Methanospirillum hung...
Q2FQ62 449 LPEAVFHAFVLGLLAn-lRTVYEIRSNAEAGFGRADILMIpk---trDYPTAYVIEFKttdGQQNTeIVS---------D 515 Methanospirillum hung...
Q8RHH4 113 GNEAFYHGLIMGMGLy-lEGEYITKSNIESGLGRYDFLIEpk----nKSKRAFIMEFKstdSVEKLeEISK--------E 179 Fusobacterium nucleat...
Q8A1M4 462 EGEHNLQGFFKAYLAl--ASYYLVQPELEMNYGYCDFFLLpdksrypDTAHSYILELKylpRTATDkELEEqa-----eE 534 Bacteroides thetaiota...
Q89ZT3 463 EGERNIQGFFTAYLSv--NAYYLTAPEVELNHGYCDLFLMpdl-lhyEVNHSYIIELKylsEKDSDaKAEIqw-----eE 534 Bacteroides thetaiota...
Q89YY0 450 EGERNIQGFFTAYLSv--NAYYLTTPEVELNHGFCDMFLMpdlqryaEIAHSYIVELKylpKEKFDaQSAEqw-----eE 522 Bacteroides thetaiota...
Q8A4P4 469 EGEAHIKGFLLAYLGm--YRYYQLYPEYELNKGFADFLFKpspsvpvMPPLTYLLEVKyakAGASEkEIRAla-----dG 541 Bacteroides thetaiota...
Q8A274 466 EGEAYVKTFILAYLGl--THYYIARPEYESNKGYADIFLQprllqlpDMVYSYCIEVKyakRDASDtEIEKll-----sN 538 Bacteroides thetaiota...
Q2FLS6 534 DTRQIQGYAQGLMQEYPE---ASIRLFVIYCIGNQGFRVFE 571 Methanospirillum hungatei JF-1
Q8RIE6 531 ALEQIKEKQYDVGLKDLGi--TKIYRIGIAFKGKNVKVKYE 569 Fusobacterium nucleatum subsp. nucleatum
Q2FUA3 524 ALTQIRERKYDSSFISGGiepNIIRYLAVVVQGKSVMVKEW 564 Methanospirillum hungatei JF-1
Q2FQ62 516 ALNQIRNQEYEAALSNAGisdEQIVRLAIILQGKEVRVATG 556 Methanospirillum hungatei JF-1
Q8RHH4 180 ALKQIEDKKYDISLKQNGi--KEITHIGIAFYGKQIKIKHK 218 Fusobacterium nucleatum subsp. nucleatum
Q8A1M4 535 GRGQLKQYSRDKKVTTISe-gTALHCILLQFKGWELIKCEE 574 Bacteroides thetaiotaomicron
Q89ZT3 535 AVEQIKGYAAAPKVRQLIq-nTKLHCIVMQFRGWELQRMEE 574 Bacteroides thetaiotaomicron
Q89YY0 523 AVAQIHGYAASPKVRLLCq-gTQLHCIVIQFCGWEMVRMEE 562 Bacteroides thetaiotaomicron
Q8A4P4 542 AREQLLRYSQDELVTEARa-kGGLKLITIVWCSWELVLLEE 581 Bacteroides thetaiotaomicron
Q8A274 539 AKIQLKQYAASEWIHQDKg-tTELKSIALVFQGWKLVRVEE 578 Bacteroides thetaiotaomicron
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