Conserved Protein Domain Family
TraC

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pfam07820: TraC 
TraC-like protein
The members of this family are sequences that are similar to TraC. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli CFN42 that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42a, which is also known as plasmid pSym as it carries most of the genes required for nodulation and nitrogen fixation by the symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58.
Statistics
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PSSM-Id: 369541
View PSSM: pfam07820
Aligned: 9 rows
Threshold Bit Score: 72.4984
Threshold Setting Gi: 503679726
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P55419           2 KKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRFRggqggangassggKKPDGNA 81  Sinorhizobium...
vbi:Arad_14093  54 KKPSSKIREEIARLQDQLKQAETREAERIGRIALKAGLGEIEIEEAELQAAFEDVAKRFRggkgs----atgkRQAGDSR 129 Agrobacterium...
WP_013913802     2 KKPSRQIREEIARLQDQLKAAETREAERIGRLALKAGLGDLEIEEDALLAAFEEAAARFR-------------KAGGGSK 68  Oligotropha c...
Q1QEW9           2 KKPSRQIRDEIARLQEQLKQAETREAERIGRVALKAGLGEIEIEETMLLSAFEEVASRFR----------------KSGG 65  Nitrobacter h...
Q8KL70           4 KSSISDLDAQIEKLRERKRLLIVKSAERFARAATRTGLAEMEIADEEVDRIIEEIAARFR-------------KGERKGA 70  Rhizobium etl...
jgi:Oant_0649    4 KNSILDIDTQIEKLHERRKELLVKSAERFARAATKSGLAEMDIADTEIDQIISEITTRFR-------------ERKKGNS 70  Ochrobactrum ...
WP_010974374     4 KPALMDIDAQIEKLRERRKTLIVKSADRFARAATKSGLAEMEIADEEVDRIFDEIAARFR-------------NGEKKQA 70  Agrobacterium
Q92ZI1           4 KSSIADIDAQIEKLRARRRSLIVKSAERFARAATKSGLAEMEITEEELDRIFEEMAARFR-------------KGEKKGV 70  Sinorhizobium...
Q2K2P3           2 KKPSSKIRDEIAKLQEQLKAAETREAERIGRIALKAGLGEIEIDESELQAAFEDLAKRFRggkvt----anggKRGSSAG 77  Rhizobium etl...
P55419          82 TAGASAAAVGSGAAQGGNGEA 102 Sinorhizobium fredii NGR234
vbi:Arad_14093 130 TGSEPSAALASGADEGGSGEA 150 Agrobacterium radiobacter K84
WP_013913802    69 PTRAAPASEPPGTSAGKASEa 89  Oligotropha carboxidovorans
Q1QEW9          66 RTSKAATGVASGASAGAPQEg 86  Nitrobacter hamburgensis X14
Q8KL70          71 AGPTPQTRRSGDSGAGAQGQA 91  Rhizobium etli CFN 42
jgi:Oant_0649   71 GGASAASHRKTNGGTGASTEV 91  Ochrobactrum anthropi ATCC 49188
WP_010974374    71 AGSPASPRGQANGATGSETEV 91  Agrobacterium
Q92ZI1          71 DHATASPHRPAAGATGTAAEV 91  Sinorhizobium meliloti
Q2K2P3          78 ESSASSTQDASGAAAGGTAEA 98  Rhizobium etli CFN 42
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