2X8X,3MC8,4BZA,2X8X


Conserved Protein Domain Family
POTRA

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pfam07244: POTRA 
Click on image for an interactive view with Cn3D
Surface antigen variable number repeat
This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centers on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Statistics
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PSSM-Id: 399907
View PSSM: pfam07244
Aligned: 239 rows
Threshold Bit Score: 29.6234
Threshold Setting Gi: 81741621
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2X8X_X 157 VTYRFLNKEGeptkQ-RTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDV--QValepgqnPRRVNLILNIKER 233  Thermosynechococcus ...
Q8F3T2  53 kTIKEVKFKG----NkNTPDADLESMIEIKVGKILTKRILDRDLKNLFNSGFFYFVdiQAed---fqDGVR-IIFDLKER 124  Leptospira interrogans
Q8EJN5 337 HVIEDIVFDNq---S-KVSLNLLKETLELKPGQNITKDELNEAIKRIYALNKFERV--DAefv--egEDGRVLTVTTRAK 408  Shewanella oneidensis
Q6LKQ8 351 YYIDNIVLNNh---T-LLSDPALLALLDLPVDRVISTEELEQAVERLHAQDNFSRI--TYvid-qkdDENI-LNLDVTEK 422  Photobacterium profu...
Q6LMH9 358 LYIDEVRLVNn---S-QYSDQALLDRLDLHSGEKMSSEQLAESVRNLYALDRFERI--DYsie-kgdDKNI-ILVDVTEK 429  Photobacterium profu...
Q9KUB9 347 VQVDEIVLQNn---T-HYSDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELV--RYqye-qrdDQQQ-LVVDVREK 418  Vibrio cholerae
Q87LW2 354 RVVDEIVIVNn---T-HYSDVLLTNRLELETGRKIETAEIEKAVENLYALDRFELI--TYhfe-evdGSNL-LVFDVNEK 425  Vibrio parahaemolyticus
Q7MHW3 361 TRVDQIVVINn---T-HYSDGLLTRRLDLETGRVLKTGEIEAAIENLYALDRFELI--SYhye-evdGINQ-LVVVVDEK 432  Vibrio vulnificus YJ016
Q5E2U2 342 LYVNKITIKNd---S-LYTESMLLDRLNLEEGRSYSADELEEHIRDLYVIDRFERV--DYyyq-eneEGTHDLIVEVKEK 414  Aliivibrio fischeri ...
2X8X_X   5 VLIAEVVVEG----AtPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADV--NAvpr-dtpLGV-RITFVVRPY 76   Thermosynechococcus ...
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