Conserved Protein Domain Family
VDE

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pfam07137: VDE 
VDE lipocalin domain
This family represents a conserved region approximately 150 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage.
Statistics
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PSSM-Id: 399843
View PSSM: pfam07137
Aligned: 26 rows
Threshold Bit Score: 226.44
Threshold Setting Gi: 902140626
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EED87601     168 DKDC-----LVNQ---CQVQAKACLQDDpDCRKGLTCTAKCL---GDNACITGCFARY----GNENLDELLKCTIEDHEC 232 Thalassiosira p...
EOD31260      52 IGSC-----LIQK---APGALARCVTDP-TCLANLACIQTCTnrpDEATCQIACGDKF----ANGVTEAFTKAAVTEQKC 118 Emiliania huxle...
XP_002180635 135 DVGC-----FINK---CGDQTKALFSNP-RGIKGVSCLGRCK---GEQSCATRCFAEF----GSESLNAWLSCTIEENEC 198 Phaeodactylum t...
CBJ31191      47 DVGC-----FANE---CKRETASCFTDG-SCLKGVTCLGRCK---GEQECATRCFAQY----GSNKLDSWLTCTLEDHSC 110 Ectocarpus sili...
XP_005764800 114 DPQC-----FAKS---CKLQTKACAENG-DCMKGLTCAAKCM---GDTQCTVGCFAKF----GNPVLDDVLSCTIEDQSC 177 Emiliania huxle...
XP_002180051 141 DQNC-----LVSA---CSLQTKACLQDDpSCRKGLTCTAKCL---GDNACITGCMARY----GNANLDNLLKCTIEDHEC 205 Phaeodactylum t...
XP_005831564 118 NGPC-----FADEktgCGKSFKECAENK-DCQKGLSCLARCK---GEPTCSTGCFAAF----ADDSMTNFLGCALEDKEC 184 Guillardia thet...
EOD38154      23 QSAC-----VVEH---CGAQLARCLADT-ACRGWSLCNAGCGlgtEALACNQRCADLHtplrGSPAIDAFSICTISDHHC 93  Emiliania huxle...
CEM35152      27 TRSSvdyygLLTK---CGGPLLRAMSDR-RGLHEFVCLMKCGm--DDIACQMRCGDLY----EEDVLKEFHICAISEHQV 96  Vitrella brassi...
CEL92120     188 DPLC-----FVRR---CQLQTKACAADR-SCMKGLTCLARCR---GDSMCSTSCFSRF----GSSTLDAFLTCSVEKEGC 251 Vitrella brassi...
EED87601     233 IKvai---leGGGDV----------------------LGREPKSPAPTVQGFDLASMEGTWYK---------------VA 272 Thalassiosira p...
EOD31260     119 VP--------QRQDD----------------------GSWPVPADSTLVTKFSASDLDGDWYI---------------SA 153 Emiliania huxle...
XP_002180635 199 VKvpk-----------------------------nvdNSAEDIGYSTTLRSFDPQSLVGTWYK---------------TD 234 Phaeodactylum t...
CBJ31191     111 VKipk-----------------------------dmdFSAIDKDPPHIVKGFEAKQLQGTWYK---------------IM 146 Ectocarpus sili...
XP_005764800 178 LKiaivapgaD--------------------------GPLDAPLPPKPLVAVTPQQMAGKWYK---------------VM 216 Emiliania huxle...
XP_002180051 206 IKvai---leGGADV----------------------FGQEPRAPAPTVTAFDPKSLQGSWFK---------------VV 245 Phaeodactylum t...
XP_005831564 185 INfpkdpkllGWLDD----------------------GAA---AP-KKVANFDINSLKGDWIKkkwdgrecdghlllqVL 238 Guillardia thet...
EOD38154      94 VP--------QRRQR--------------------------CAVPRNTLPALELAAFEGDWWV---------------TR 124 Emiliania huxle...
CEM35152      97 IP--------QRIDRhaaegrvrddqgkseqvarqlpGASEVDRRIPVVAALEPAALQGEWWV---------------VY 153 Vitrella brassi...
CEL92120     252 VNvprdlgpaTWTSP----------------------KEDQAPGP---VDDFDVASMEGTWYK---------------VL 291 Vitrella brassi...
EED87601     273 GYNPNYDCYACQRNTFSspegglsdslqlptggilgslsnavGSiGADR--------------LQV-------------- 324 Thalassiosira p...
EOD31260     154 GLNKAFDIFDCQLHRFS-------------------------AP-APDL--------------LVG-------------- 179 Emiliania huxle...
XP_002180635 235 GLNPNYDLFDCQKNTF--------------------------TPtSDKE--------------LDM-------------- 260 Phaeodactylum t...
CBJ31191     147 GVNKKYDCFDCQKNTFNvaqavdapv-------paggdvtaaTAtPRQV--------------ADI-------------- 191 Ectocarpus sili...
XP_005764800 217 GWNSNYDCYDCQRNSF--------------------------RPaARQQamaia----adgsaVDV-------------- 252 Emiliania huxle...
XP_002180051 246 GYNPNYDCYACQRNTFSapdssangnrn---nllwsvasgntNPaVTNQ--------------LRM-------------- 294 Phaeodactylum t...
XP_005831564 239 GLDDRYDCFECQQNRFRe---------------------------ENGQ--------------WRM-------------- 263 Guillardia thet...
EOD38154     125 GLNPIFDCFDCQRHTFSl-----------------------gAAgEPKR--------------LHG-------------- 153 Emiliania huxle...
CEM35152     154 GLNPVFDCFPCQHHTASv-----------------------vKS-APGKtseavrsddgaphpIMRwkngawtaangvrf 209 Vitrella brassi...
CEL92120     292 GMNSRYDCFDCQKNTFTp------------------------AEePNKP--------------WRV-------------- 319 Vitrella brassi...
EED87601     325 DVEFSMPRylpdgspqppsgvresfissadsmegsglqSVG----YNQYSTHETMVFDtvksngvgeavkl------alg 394 Thalassiosira p...
EOD31260     180 NLQWRIKDpv---------------------------aGTN----FVTRYTVQTFKQD---------------------- 206 Emiliania huxle...
XP_002180635 261 GIFFRVQRpp--------------------------esGGG----YWENALTEHMIVDvpvqpptagtqlvasanaatgd 310 Phaeodactylum t...
CBJ31191     192 KVNFRLAKp----------------------------dSDD----FWENTITETLQVDpad------------------- 220 Ectocarpus sili...
XP_005764800 253 DVEYSLPRqrag------------------------------mpqDFHAQLHEKLVFDttpg------------------ 284 Emiliania huxle...
XP_002180051 295 DVEFSMPHllpdgsppppsnvresilvsgedgsvfgskSIA----LNDYRTRETMVFDqvstgnnmvfh----------k 360 Phaeodactylum t...
XP_005831564 264 DTTFRLPRarg------------------------mskDSN----YLQNDLTEEVFVDskd------------------- 296 Guillardia thet...
EOD38154     154 ALRYSVKRdl--------------------------hcSFPqrceYVRREVNQSFAQS---------------------- 185 Emiliania huxle...
CEM35152     210 DISYRVPVp-----------------------------HGGdkqpFFTRHVEQVFFPH---------------------- 238 Vitrella brassi...
CEL92120     320 AVEFSLPRp-----------------------------RGG----AWNNRVSEDMFPEatpdm----------------- 349 Vitrella brassi...
EED87601     395 krgeeklysrTaHSEGEMFG-------LKFWENWYIIGqnn-----pgQDEFKFVYYNGKT-RQNTYDGAFIYSRSRTLS 461 Thalassiosira p...
EOD31260     207 ----------A-SRPGVLYNhdn--efLHYQDDWYVLAnrrayddakgKGGYVVVYYRGSNdAWDGYGGAVIYTREPKLR 273 Emiliania huxle...
XP_002180635 311 lndelnptgrTmHTAGKMYG-------LEFTENWYILGesdg---kgsVPPFKLVAYKGHT-LQGNYEGAFVYAKEATVP 379 Phaeodactylum t...
CBJ31191     221 -------sprTfHTDGKLFG-------LSFKENWYVTGhst-----dpGEEFVFVQYRGHT-LQGSYDGGFVYARKPYLP 280 Ectocarpus sili...
XP_005764800 285 -------shrTaHTEGKMFG-------LTFWENWYVIGand-----rgEDAFRIVYYTGKT-LQNKYEGAFVYARKPDLP 344 Emiliania huxle...
XP_002180051 361 gttqevsysrTaHSEGEMFG-------LKFWENWYIIGend-----pgQPEFKFVYYNGKT-RQNTYEGAFVYSRSKELA 427 Phaeodactylum t...
XP_005831564 297 -------arpSmHTTGKTFG-------LTFWENYYIVGqg---------kdWQFVRYVGHT-LQGGYKGAFVLSRTPELS 352 Guillardia thet...
EOD38154     186 ------------NATGHLANhgnppaqLHYADDWYVIAh--------rPETYILVYYCGCNdADCGYSGAVLYTRSRSGA 245 Emiliania huxle...
CEM35152     239 ----------R-SSPGVLRShdp--tyLHQSDDWYILSa--------dPERYFIVYYMGCNdAWCGYDGGVVYSRTPEPS 297 Vitrella brassi...
CEL92120     350 ------rkqrSyRTKGEMFG-------LTFWENWYIIGqrd-----egPDPYKFVYYTGHT-LQGNYRGAFVYVRTPTLP 410 Vitrella brassi...
EED87601     462 PASMEKVYKIA-----KDAGMNPDQFCKIQN 487 Thalassiosira pseudonana CCMP1335
EOD31260     274 QEYVPEISAAL-----DKVGLRWADFTETDN 299 Emiliania huxleyi CCMP1516
XP_002180635 380 EAAKPAIREAA-----TKAGLDFDAFTRIDN 405 Phaeodactylum tricornutum CCAP 1055/1
CBJ31191     281 KSALAKVARVA-----REHGIDPGSMLAIDN 306 Ectocarpus siliculosus
XP_005764800 345 ASAMPHIYSIA-----RQAGLEPTSFCAIDN 370 Emiliania huxleyi CCMP1516
XP_002180051 428 PESMAKVYSIA-----KEAGMKVDQFCRIRN 453 Phaeodactylum tricornutum CCAP 1055/1
XP_005831564 353 ASALEEVKAVA-----TEQGLDLSGFCRIKN 378 Guillardia theta CCMP2712
EOD38154     246 LDAADKAAVAAaaraaGVDGFELSALCTPDN 276 Emiliania huxleyi CCMP1516
CEM35152     298 QATIDDVREAL-----RCAGLSIVSMCPVDN 323 Vitrella brassicaformis CCMP3155
CEL92120     411 QSIVPELTQVA-----ERAKLKLADFCVIDN 436 Vitrella brassicaformis CCMP3155
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