1SG5


Conserved Protein Domain Family
ROF

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pfam07073: ROF 
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Modulator of Rho-dependent transcription termination (ROF)
This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.
Statistics
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PSSM-Id: 399808
View PSSM: pfam07073
Aligned: 37 rows
Threshold Bit Score: 67.9638
Threshold Setting Gi: 81541673
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1SG5_A            10 INCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRK----NVEYLVVEAA-GETRELRLDKITSFS----HPEIGT 80  Escherichia...
Q081B6             4 IKCEIYDYIEIICLYRYRVKLTLTDGTHIQGQFDRILYVNrnqqKHEAIAGINQqQQAIEVILTYITSIDvlsqNASFSH 83  Shewanella ...
Q82XR7            10 ISCDLHDYIEVACMYSYQVRLILKDQSTVEGKAKDILTDAe---KREFLLLETE-SGSQQVELISLDRLQvltpGARFSE 85  Nitrosomona...
EIC28883           6 ISCDLHDYIEVACMHNYRVELVLKGGEVIEGKALDVLTSPe---KREFLVIDNG-GQKQQVELTQLHKMIaltpNASFNE 81  Methylomicr...
jgi:Nit79A3_0907   6 ISCELHDFVEVACMYGYRLKLILKNNQIIEGKAIDVVNSPe---KGECLVIDS--DSRQHIELIQLVRMEvltpNAKFSE 80  Nitrosomona...
WP_013819542       6 ISCNLHDYVEIACLYHYQVKLTLRDRQTIEGKAIDTLSSAn---KCEYLLIDT--GQKQQIELNQLKKLQvltpNARFTE 80  Methylomona...
Q12MD8            23 IRCADYDYIEIMCLHRYRVTVMMKDLTQYEGQFHTTSIIEfegiKREAIVGFDInQAPIQLMFEDILSISvhddKAQFSR 102 Shewanella ...
jgi:Fbal_3574      1 MRCQDYDYIEIACLYHYPVRLTLRDGRVVEGIAGDSTWNAq---RQEVLSLTTD-QGLETVLLADLVSLTvtvdNPHFQQ 76  Ferrimonas ...
WP_012485931       2 IHCDQHDYIEIVCLYHYPIRLTLTSGATIEGIAQDTQHNDq---REECIKLSTD-TGEQLVVLSELKQLDvlveNPHVER 77  Cellvibrio ...
CAV18741           8 ISCNDYDYIEIVCMHRYPIKLTLKSGEQIECVGLDTQRNDs---REECIKVSIQ-GVEQLVVLTDLSTLEvcvdNPHFQQ 83  Vibrio tasm...
1SG5_A            81 VVV 83  Escherichia coli
Q081B6            84 ISL 86  Shewanella frigidimarina NCIMB 400
Q82XR7            86 VVF 88  Nitrosomonas europaea
EIC28883          82 VEF 84  Methylomicrobium album BG8
jgi:Nit79A3_0907  81 VIF 83  Nitrosomonas sp. Is79A3
WP_013819542      81 VIF 83  Methylomonas methanica
Q12MD8           103 LQF 105 Shewanella denitrificans OS217
jgi:Fbal_3574     77 VQF 79  Ferrimonas balearica DSM 9799
WP_012485931      78 VVF 80  Cellvibrio japonicus
CAV18741          84 ISF 86  Vibrio tasmaniensis LGP32
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