Conserved Protein Domain Family
TraN

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pfam06986: TraN 
Type-1V conjugative transfer system mating pair stabilisation
TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilisation (adhesin) component of the F-type conjugative plasmid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Statistics
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PSSM-Id: 399757
View PSSM: pfam06986
Aligned: 18 rows
Threshold Bit Score: 272.686
Threshold Setting Gi: 315418768
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015460509                    302 CEQQSE-VCTSSdPVTRIV----NGVPVTQPCWAWARTYECnrITTGHNDCGTLeANGACTYVRTECLDEEp--NGACAV 374 Sphingomonas sp. MM-1...
WP_025386773                    272 CIMDSSqSCLEP-NQAKVI----GGISIKRSCWGRGYNYQC--AAVNESACTPL-INQGCSQTASTCIEAK---ANRCER 340 Legionella...
CBJ12216                        270 CILNNEsACLEP-NAQKTI----QGVGITRPCWGRSFQFQC--SYLESSSCTSL-MMEGCSQRDSQCVNSA---NGLCSS 338 Legionella longbeachae NSW150...
CAM80151                        265 CYEVNR-INYDG-GDRVFF----DKFKVNRPYWKQKILFSC--TSDPKDGCKHL-KIQNCELKNSTCQKSV---ANICLL 332 Orientia tsutsugamushi str. Boryong...
dbos:1099484000100_PB2503_00657 313 CTLLGE-TCVEG-PETRAI----GGVDITRDCWAYERTYTCssLGGEVTDCD---VPAGCILEGSTCLSTDd-lTGECRA 382 Parvularcula bermudensis HTCC2503...
Q2NDH8                          278 CTLDTE-ICTDAdPQTRIV----NGVSVTRPCWEWQRSYTCt-SRETATDCSDIeSQGTCRFLREECLTDE----VPCET 347 Erythrobacter litoralis HTCC2594...
WP_013832766                    277 CQQDTE-TCTDSdPVTRIV----DGIAVTQPCWAWSRSYTCa-QFTQAQDCQTLeSTPGCSLVREDCLSGE-----PCRT 345 Novosphingobium sp. PP1Y...
WP_010890973                    409 CTLAAE-TCTAP-NETRLI----DGVPVTRACWETAKTYQCqtVVGGGNDCGKLdATPGCMFDHETCLDDPpsgDGSCKV 482 Sphingomonadaceae...
jgi:Swit_5379                   301 CTLESE-ICTASdPVTRIV----DGVPVTQPCWAWQRSYQCh-TISSANDCSELeANGSCTYQRTECLDEDp-dGGPCKV 373 Sphingomonas wittichii RW1...
jgi:Astex_3796                  312 CALRSQ-ICTQT-ASMFPEimahFGFA-ADTCFSTAFSYTCqnIIGNGSNCT---PDASCSFKTRNCIDATasgDASCQS 385 Asticcacaulis excentricus CB 48...
WP_015460509                    375 EERVYRCpTPGSAVSdapQYICGDDVYCINGDCEPIVREASTEFKDALVALHAIDRAGKEFDENNf-----tVFQGTRET 449 Sphingomonas sp. MM-1...
WP_025386773                    341 YSQTFTCmQQFCMPE---KTVCPGKVSCADGQCDTSKNETSDDMAEGLSRLGALAGVAGDVTANQvrsgspaIFTGSAKE 417 Legionella...
CBJ12216                        339 YEQTFTCfQKSCLPE---KTVCPGRIGCSDGSCDLSEEEVSDDAAEGLSRLGVLAGSASEVAAKQihsgvpsIFTGNNST 415 Legionella longbeachae NSW150...
CAM80151                        333 WQHDYSCsTEKQTMLh--SSLHNNSIFCLGGNCNTPTIIPNRDIAKV-AHLAMLNQMSKDIKTNPv-----sVFSGKHRK 404 Orientia tsutsugamushi str. Boryong...
dbos:1099484000100_PB2503_00657 383 TEYQYVC--ETAGAPggaVGYCEEDVYCIDGDCETLTRPQNDEFPEAVSALSMMGQLQDDVDDATl-----tIFPGEYHK 455 Parvularcula bermudensis HTCC2503...
Q2NDH8                          348 WERIYECpLPATDSTt--QYVCDGDVYCIDGSCETIERTANDEFKDAAVALHAMDEARGQFDPNTl-----tLFRGTRNT 420 Erythrobacter litoralis HTCC2594...
WP_013832766                    346 WERVYDCpVPDQPADt-sQFICDGDVYCIDGSCETIEREANDEFKDAVVALNAMDQARREFDPDTl-----tLFKGTRNT 419 Novosphingobium sp. PP1Y...
WP_010890973                    483 AERVYKCpIPGSTSQp-aQYICGDDVYCVNGDCEPIVREASDEFKDAVVALNALGQANSEFDESTl-----tLFKGTAES 556 Sphingomonadaceae...
jgi:Swit_5379                   374 QEKIYRCpTPSGTSAdapQYICGNDVYCINGDCEPIERQASTEFKDALVALHSIDQAGKEFDETNy-----rVFSGTRET 448 Sphingomonas wittichii RW1...
jgi:Astex_3796                  386 WENVYEC--KKAVTTpvdASVCDAS-WVMGTTTIEAVDDPDQDIASAVSALNAVKAASNTYEAEMs------IFKGQDLR 456 Asticcacaulis excentricus CB 48...
WP_015460509                    450 CHKPVFGLINCCAGKvsglltvgagaaalaggptaiaalATPFLTLFA-CSQSEMRLDIKDRMGFCHKVGTYCSS-S--F 525 Sphingomonas sp. MM-1...
WP_025386773                    418 CKKYPLGFRDCCTDS------------------------GWGDWV--KhCPQDLQVLQRAKQENRVVYLGSYKNH-K--- 467 Legionella...
CBJ12216                        416 CRKVKADVRNCCKGS-----------------------------YQMThCSEDEKRLAKAKEEGRAFKVGKFCAL-K--K 463 Legionella longbeachae NSW150...
CAM80151                        405 CKKDVFSFLNCCSSMt-----------------------GWGRDIGLSqCKSKEQELALYRKKGYCYYIGTYCSS-RipI 460 Orientia tsutsugamushi str. Boryong...
dbos:1099484000100_PB2503_00657 456 CDKAIAGLQNCCRDD------------------------GFLTDIGFD-CSADDRALANKQSAGLCHYVGTYCSDrT--L 508 Parvularcula bermudensis HTCC2503...
Q2NDH8                          421 CSSKVFGVLNCCKGKgfp------------------lipGISLLVALG-CDREEVLLHQRDAQGLCAYVGTYCSD-K--F 478 Erythrobacter litoralis HTCC2594...
WP_013832766                    420 CSSKVFGVLNCCKGKgfp------------------lipGIQLLVALG-CSREEMLLHQRDAQGLCAYVGTYCSD-S--F 477 Novosphingobium sp. PP1Y...
WP_010890973                    557 CAHKVFGLANCCSGK------------------------GVPLLVPLL-CSPAEVLLDQKDDAGLCHKIGTYCSS-S--F 608 Sphingomonadaceae...
jgi:Swit_5379                   449 CHKPVFGLINCCAGKvsglvpvaagaaalaggpaaiaafATPFLVLFA-CSQDEMRLDIKDRMGFCHKLGTYCSS-S--F 524 Sphingomonas wittichii RW1...
jgi:Astex_3796                  457 CGKAVMGFANCCKDS------------------------GWGTDVGLAeCDSNELKLMESQKKKACHYVGTYCSKdS--L 510 Asticcacaulis excentricus CB 48...
WP_015460509                    526 LGVCKTRRT-AYCCFESKLSRILQEQGR-VQLGKPWGAPK----REQCHGFT 571 Sphingomonas sp. MM-1
WP_025386773                    468 ----LGARHyTYCIFPTKLASIVQIQGRgGQLGIPYGTAE----YPNCRGLT 511 Legionella
CBJ12216                        464 MGMCLEEKQ-SWCVFPTKLAAIIQIQGRySQLGIAFGWAKdeenHANCRGIT 514 Legionella longbeachae N...
CAM80151                        461 LGICLARKS-TYCCFQSKLARIFQEEAR-KQLKMNFGTPE----CPKCRGLT 506 Orientia tsutsugamushi s...
dbos:1099484000100_PB2503_00657 509 FGICLKKRK-TFCCFNNVLARLIHEQGR-PQVGWDWGSTK----TPDCSGYT 554 Parvularcula bermudensis...
Q2NDH8                          479 LGVCLTKKK-VYCCFESKLSRILQEQGR-KQLPKPWDKPK----EEQCEGFT 524 Erythrobacter litoralis ...
WP_013832766                    478 LGVCLTKKK-VYCCFESKLSRILQEQGR-QQLNKPWGKPK----TEQCLGFT 523 Novosphingobium sp. PP1Y
WP_010890973                    609 LGICLSKRD-VYCCFLSKISRILQEQGR-PQIGKTWGTPK----KPVCDGFT 654 Sphingomonadaceae
jgi:Swit_5379                   525 LGICKTKRT-AYCCFESKLSRILQEQGR-VQLGKPWGAPK----KEQCQGFT 570 Sphingomonas wittichii RW1
jgi:Astex_3796                  511 FG-CLQKSM-TYCCYGNSLARIIQEAGH-QQLGIGWGSAK----SPNCAGFS 555 Asticcacaulis excentricu...
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