5ZNM,1JCH


Conserved Protein Domain Family
Pyocin_S

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pfam06958: Pyocin_S 
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S-type Pyocin
This family represents a conserved region approximately 180 residues long within bacterial S-type pyocins. Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.
Statistics
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PSSM-Id: 399737
Aligned: 36 rows
Threshold Bit Score: 78.5646
Threshold Setting Gi: 17942973
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5ZNM_A              141 V--IEPGATSVNLPVRGQL--INSNGQL--ALDLLKT-GNESIPAAVPVLNA-VRDTATGLDKitlPAVVGAPSRTILVN 212  Escheri...
wugsc:SARI_02603    912 LrqKSLTGAKATTRVRFFWr-QDEQGNM--RVYGVHT-GEGTPYEGVRTAEM-KWVEKNSRYEf--KPAHGADVPLITWT 984  Salmone...
Q2C918              172 TeeELRQMREVKSRIRVQIi-DPDDDDVypTVRAFHV---GDGHDRIQVRYV-DKNAKGQYSV-----ILEEGGPTIYWS 241  Photoba...
wugsc:VIBHAR_00543  589 TdqDLRQVTTAQSRVRVHIt-EPQDGEFypHVQGYHV-----DDTRIPIKYV-KQGNNGQLSV-----AIEDNGPTIYWT 656  Vibrio ...
WP_000366553        565 GnsDFAANDTTTMRVRFNMy-TDENGKQ--QVLGIKTgEGSVYGERVAKREA---VRQGQHFV-----AELENGITITWT 633  Vibrio ...
jgi:Maqu_0032       259 TeeELREMTEAAIRVRFHLh-VDATGNL--RVAGYHVnDSTGYKDRVPVAHA---ELKGENFE-----VVVDDDFTLVWY 327  Marinob...
WP_015885784        156 SeeQLRSMQRARSQMRLHIe-QREDGTL--KGYGFYT-GNHADWQMIDVVQ---FQSRGDQFV-----ADLDEGVELIWT 223  Pseudom...
Q3KGY0              174 TedQLLALKQARTRVRLRVe-QQADGNL--KGYGFYT-GKNRDWEMVDVVQ---FAARGNRFV-----ADLGEGVELVWT 241  Pseudom...
Q3K6V8              148 TdeQLRSMSRATTRVRFQFr-RDAEGVM--QVYGIHT--GASGDDSVRTVKV-EWNNDKSAME------AKLNDITILWT 215  Pseudom...
wugsc:KPN_02272     151 LreIARQNGTVHTRVRFRIeeDPESGEL--VSRSYEV-GEKSGLDRVRVRFAkQLNKETWGFE------DPSIKGTFVWS 221  Klebsie...
5ZNM_A              213 PVPQP-----SVPTDTGNH------------------------QPVPVTPVHTGTEVKSVEMPv--TTITPVSdVGGLRD 261  Escheri...
wugsc:SARI_02603    985 PERPEg---gDLPAHTGSD------------------------IKPIDQATILVTPIPDGKDEy-tTPPFPMPeERDLND 1036 Salmone...
Q2C918              242 PDETGn----QVPYTTPSQ------------------------NDGVSFGDIWVNPLSDAVSNs--STVLPMPaESDWQD 291  Photoba...
wugsc:VIBHAR_00543  657 PEENGe----ASWQTTPDH------------------------SDDFEKEDILVTPIHSDGDAn--VTVTPAPeEKDWRD 706  Vibrio ...
WP_000366553        634 PDGSTd---vLTPDTVLPE------------------------NDQLDVHNIWVRPIEEHEQEi-gTALYP---EEELAE 682  Vibrio ...
jgi:Maqu_0032       328 PDDSGh---rPVVSTEYPA------------------------DSGIDPYSILVTPIQEDG-----QEHSPPGyQQPFED 375  Marinob...
WP_015885784        224 PAADP-----SDTLGIPAL------------------------EAAPQAPVIWIYPPTEKAAQilvNPIYP----PEYRD 270  Pseudom...
Q3KGY0              242 PAVDG-----SDILGIPAL------------------------EAAPQAPHIWVYPPTKAADGilvNPVYP----PEYWD 288  Pseudom...
Q3K6V8              216 PQRGPl----GSMPPLVHP------------------------EHGEALSTILVHPIAANTDSq--IEILPGe-DITAED 264  Pseudom...
wugsc:KPN_02272     222 RSAGQgkfewGSSQTTVHDggaggsttpptpipeprsvwglpnPAPASLPPVPGTPIPEEQGPn--IETLP-IeDRDFND 298  Klebsie...
5ZNM_A              262 ---FIYWRPdaAGTGVEAVYVM 280  Escherichia coli
wugsc:SARI_02603   1037 ---YILVFP--AGSGIKPVYVY 1053 Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
Q2C918              292 ---RILVFP--EDSGVEPLYLV 308  Photobacterium sp. SKA34
wugsc:VIBHAR_00543  707 ---AILVFP--ESSGIAPLYVV 723  Vibrio campbellii ATCC BAA-1116
WP_000366553        683 ---YIVTFP--ADSGVSPLYLV 699  Vibrio cholerae
jgi:Maqu_0032       376 qveLIVSFP--ADSGIEPLYLV 395  Marinobacter hydrocarbonoclasticus VT8
WP_015885784        271 ---FILVFP--AESGVRPLYVV 287  Pseudomonas fluorescens
Q3KGY0              289 ---FILVFP--AESGVRPLYIV 305  Pseudomonas fluorescens Pf0-1
Q3K6V8              265 ---CILVFP--AETGLKSLYVV 281  Pseudomonas fluorescens Pf0-1
wugsc:KPN_02272     299 ---FIIVDP---MGGVPAIYVY 314  Klebsiella pneumoniae subsp. pneumoniae MGH 78578
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