Conserved Protein Domain Family
RNA_pol_Rpa2_4

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pfam06883: RNA_pol_Rpa2_4 
RNA polymerase I, Rpa2 specific domain
This domain is found between domain 3 (pfam04565) and domain 5 (pfam04565), but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability.
Statistics
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PSSM-Id: 399696
View PSSM: pfam06883
Aligned: 120 rows
Threshold Bit Score: 47.8454
Threshold Setting Gi: 159117422
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFN59491                  552 VGHVRASLAGAMVAHLRAIKAAslaaeeqltpgatlvplhDeE---MsVPSHAEVVHIPYE-R----GAPYPGIFIFTQA 623  C...
XP_015781158              578 IGYVNEAKAKSFVQKIRVLKTS------------------E-D---QsTPSVIEIGFIPKT-Ga---ATQYPGIFIFTNP 631  t...
KJE97698                  553 IGKLAPENAAQITAHFRYRKAQ------------------G-H---KdLPRYMESALVLPS-E----RGQFPGLFIFTSL 605  C...
KRY27727                  542 IGVIGEENVQQAIQILRKEKSS------------------G-----VfLSIFTEICFFSRKtF----SMHYPGLFIFTEF 594  T...
A0E2A7                    541 IGYLNSSLLPTFEHTLRVYKSN------------------------GtIKETTEVACLPRQeNk---SPLFPGIYINTTV 593  P...
Q22C62                    574 IGYIESKNAQTFCQSLKYLKIM--------------------QdptRlIPADLEIGYVPKLnLe--kQNIFPGIFLHTNE 631  T...
XP_004032431              500 IGYIENECAEQFCQSLKYLKIV--------------------QdqeRlVSADLEIGLIRKEiQd--kQILFAGVYLYTNE 557  I...
WGS:AAFB:cds.EHI_186020A  543 IGKVSPHEINSFVQQLRYERAVy----------------------nPkIPNTLEIGYCDGYlQ-----DGYHALYLNDLP 595  E...
EFP00990                  538 IGYVPIAKAASIERYLRCAKVA------------------N-D---ArIPYTTEIALVRRStDikniQTQYPGIYILTDP 595  C...
XP_002131003              571 IGWMPVHQGHQAVNVIRCKKAR------------------G-Q---DnVPITLEICLIEYTgK----PTQYPGLYLMSQE 624  v...
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