1NXI


Conserved Protein Domain Family
RraB

?
pfam06877: RraB 
Regulator of ribonuclease activity B
This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.
Statistics
?
PSSM-Id: 399691
Aligned: 89 rows
Threshold Bit Score: 50.3516
Threshold Setting Gi: 294474696
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1NXI_A                 21 TRDIIQALLEDGs-DPDALYEIEHHLF-AEDFDKLEKAAVEAFKMGFEVLEAEEteDE-----------DgnkLLCFDAT 87 
rhodo:RCAP_rcc00319    10 TEQVFREI-QSMe-SLPEKACINFQFVtDEPKADWDGFTEAAEAAGYTVEWYEAddED-----------D---EDCLEIT 73  Rhodob...
Q67LG4                 16 TIQAFRALVDPAh-PPREPFVLEQHFY-AAEGGDVDGLAAALEERGFKVESLVYdpDNa---------dR---AWRLVAV 81  Symbio...
jgi:Halhy_4458         29 idSIFDKMELQGv-DIQKPLLYGFYFY-DQDQSKLEKLKDELLKDKYKLVRLEKaeDQ---------------EFVLHVE 91  Halisc...
CAZ97403                7 IQEIYDHMHSNGv-NTDADMLYGYFFT-NSEPQTLEKVSELLKSEGFEHVDIYPdd------------tG---EYWLHLE 69  Zobell...
Q8P9V8                  4 LKQMFDHIRSETdwNLDGPLRWEYFFA-DPAQQPLQQLAEQLTKDGYRVIDIFLgeRDeddg----ddeE---SYFLHVD 75  Xantho...
EHQ29975               24 NQDVLKRIYSDGi-EPTDQLPVNFFFV-TDTEDKATLFRDYLCGNYPQYTEIEVwdYD-----------E---HFEIRGF 87  Mucila...
Q88LT7                  9 SSNVLRQMKAGGf-DFTQIHPIEFYAV-FPDEAGARRAAGQFRGESLNAQVKELg-------------dG---AWHLELS 70  Pseudo...
Q884N1                 10 SSNVLRRMKEGGf-DFARIYPIEFYAI-FPDEERARQAAEQFRGESLNTQINVRd-------------dG---AWHLQLS 71  Pseudo...
PRJNA194094:J421_5369  35 kRDVFRALREVGv-DAAQPTEVSYYLH-FPTLRAAESASAQVAALRIDA-------PKlavrieraamgT---SWLCLVT 102 Gemmat...
1NXI_A                 88 M-QSALDakLIDEQVEKLVNLAEKFD-IIYDGWG 119
rhodo:RCAP_rcc00319    74 TgPVVLTfeNLWAEEEKLTLMAAIYG-FIADGWG 106 Rhodobacter capsulatus SB 1003
Q67LG4                 82 R-LELLEerRLLAVSDELDALARRFD-AMYDGWL 113 Symbiobacterium thermophilum
jgi:Halhy_4458         92 K-VEIHSraSLLERENQLEQLSKTFQvASYDGWD 124 Haliscomenobacter hydrossis DSM 1100
CAZ97403               70 R-IESHNasSLFELNKTLYAVADKFNlSSYDGFD 102 Zobellia galactanivorans
Q8P9V8                 76 K-LEHHTleTLNQRNAAFDALAKRFHvAAYDGMD 108 Xanthomonas campestris pv. campestris
EHQ29975               88 SsPVLMEieAINQWNQIMWDAGYQYD-CILDGWE 120 Mucilaginibacter paludis DSM 18603
Q88LT7                 71 K-VMYAThgGIGDFEEAFEQLVTPYG-GEVEGWG 102 Pseudomonas putida KT2440
Q884N1                 72 K-VMYATydGIGDFEQDFQMVISPMD-GEVEGWG 103 Pseudomonas syringae pv. tomato
PRJNA194094:J421_5369 103 T-HAIPSerAIHAACTELGEVAAEYG-GELDGWE 134 Gemmatirosa kalamazoonesis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap