6MJP,4B54


Conserved Protein Domain Family
LptC

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pfam06835: LptC 
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Lipopolysaccharide-assembly, LptC-related
This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The lipopolysaccharide component of the outer bacterial membrane is transported form its source of origin to the outer membrane by a set of proteins constituting a transport machinery that is made up of LptA, LptB, LptC, LptD, LptE. LptC is located on the inner membrane side of the intermembrane space.
Statistics
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PSSM-Id: 399668
View PSSM: pfam06835
Aligned: 51 rows
Threshold Bit Score: 96.545
Threshold Setting Gi: 81535649
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6MJP_C          9 VLLLFIASWSLYYLLGQEQDsk----iqVAPNLELPMFSGENLENISYDEQGI-RNYVITSIHLDHYAKSGNTLFKAPIL 83  Vibrio cholerae
Q8F3J5          9 ilvFLISVVCGFFLIIFENCkkvnyervEKERESGSSISIRNFKREAYDSSGQ-LQWELRANESFVYVNENKTTFYDIDF 87  Leptospira int...
Q5NG31         16 IIVIIFSMLYISYNALDGGKpl-----kNIPQKNRVELKAFDFNYNKYDSSGN-LAMSFFAKELQRYLNQD-LYMTDITE 88  Francisella tu...
Q3IG36          7 VLSVLFIGCMVWLWYPYFTQvntv-akaDSEVIAKPDYTAIELKQTAFDENGE-ISHKVTAVKTELYEQLGFTLFEKPTF 84  Pseudoalteromo...
Q5R0I9          9 LILLFGAGLLLVWRPFSDDAdgn---naATTRTMQPDFTAFGLETRIFESDGL-LAHKIKSEKMSHYNQIGLTELKRPVY 84  Idiomarina loi...
Q47VI4          9 LFVLLLSALIYGIIEWRSASieq---dtLIVDEQRPDFIAEQLESKIYSDLGQ-LSHTIEAERMEHYSDLEVSYFELPNY 84  Colwellia psyc...
jgi:Shew_3308   8 IIAFFGTALILYWQVQSKKGse----elALDNVDRPDYIVRDLKSVQYNDEGG-INSRVSASHMEHYAERNQTYFTQPIY 82  Shewanella loi...
Q8D2M9         16 YLIIIFIIYFQIFFSFECIG---------EYSSIKDNSQINNYNMRIYNINGS-IKYKIFAQNIIISSNQEEIFITNPIV 85  Wigglesworthia...
Q7VQS2         23 MVLFILIYYFHIHTTHSTMHpy-----iSLLDNEIYTHQGKEVITNMYNIIEKnLTLNLIANNVQYHPNQKTISFTHPSI 97  Candidatus Blo...
WP_010944572   11 IIVAILGGWYMNQHKPTDYSlt-----qLIKKEGTPDYSGRNISTMIYDVNGQ-PQYFAKATEIKRYEATQHTEFINPFI 84  [Haemophilus] ...
6MJP_C         84 KVYREGTl-QEWEITARRGILSK-DQVLTLYDDVLAKNLLPDSG--------------FDTLTTSEMSIQLKSRDFWADK 147 Vibrio cholerae
Q8F3J5         88 DQYEAGK--FKSKLLAEKGEINHkTRLMLLEGKILLKTD----D--------------HKILTAKTMEYNMDTKKLVSDS 147 Leptospira int...
Q5NG31         89 KSYDKATekLDWQVQAKHAQQLAnQNLIHLYDGVNAIMITKKSAantqktsdndstpdKIYIKSSEMFYNSSSKDFYNNR 168 Francisella tu...
Q3IG36         85 ILYDDRQ--KTWRINADEATLYD-ERQLILEGNVTAQNLIDGAM--------------IDKITADNIQVDIMLLTMRSEQ 147 Pseudoalteromo...
Q5R0I9         85 TVFSEQGe-ELWEVSAAQGTFYD-DQTLILEHDVEILALEPDTH--------------IEQVLTEYLIVDLKNESMSTEH 148 Idiomarina loi...
Q47VI4         85 TLYPQKEg-QPWKVSAQEATLYK-DNRVELKNQVHIKATEIDGL--------------IKEIHCKTIALDLKTNIISSEQ 148 Colwellia psyc...
jgi:Shew_3308  83 LVYPDNGd-AQWRLRSTKGTLDKnSGRVTLENNVIIDAISPEEP--------------IQTIETTYLELDLNTMIMTSDR 147 Shewanella loi...
Q8D2M9         86 IIFNENKi-PIWSIDSMQAKISKkENYLFLYGKTIIKNFIYSLY--------------IKKIYTNNAILNLKTHDIFSRK 150 Wigglesworthia...
Q7VQS2         98 TIFNNKNi-AIWYITCNQAQLYHqKKTLNLHGQVFINQIVKKIC--------------TQSIITNQLLIDLNNQSIISNN 162 Candidatus Blo...
WP_010944572   85 NLYDTQTraKQWNISAEQAEITH-EKMLHLVGNVKLKALENNAQ--------------LQKIVTDKLTIDLNTQDVFTDS 149 [Haemophilus] ...
6MJP_C        148 PVELRGPQF--ETHGQAMKGNFADHSAELyNQVQ 179 Vibrio cholerae
Q8F3J5        148 EVSISADGT--TIRGIGLRADKDLNKFTIlKpta 179 Leptospira interrogans
Q5NG31        169 FTKMYDPKTgnNTTGTGVKGNSETKIIELsQNVR 202 Francisella tularensis subsp. tularensis
Q3IG36        148 PVIITGPNL--KITGKGLEANLTTEVIKLiNHTR 179 Pseudoalteromonas haloplanktis TAC125
Q5R0I9        149 PVSIHGPRL--LIRGNGMTADLKAERMELkRHVK 180 Idiomarina loihiensis
Q47VI4        149 SVVVVGRDF--TMYGSGLIIDLNTKKMTLiQHER 180 Colwellia psychrerythraea 34H
jgi:Shew_3308 148 SIRITGRDF--LITGEGLYADLNAQNIKLtSQVE 179 Shewanella loihica PV-4
Q8D2M9        151 KTILFGSNF--NSTGIRMQGNLKYKIFLLkDNIT 182 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Q7VQS2        163 KTIIHGHYF--YSIGSCMNINLHTQTTTLfGKIY 194 Candidatus Blochmannia floridanus
WP_010944572  150 KVTSIGAGF--SSSGIGLKGNLKQQVATLiKDVK 181 [Haemophilus] ducreyi
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