5ZWO,3JCR


Conserved Protein Domain Family
PRP1_N

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pfam06424: PRP1_N 
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PRP1 splicing factor, N-terminal
This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N-terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.
Statistics
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PSSM-Id: 399435
View PSSM: pfam06424
Aligned: 108 rows
Threshold Bit Score: 86.7998
Threshold Setting Gi: 146451102
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5ZWO_N         11 PPAGYVPGIGRGATGFS---Tkekqvv-------------------------snddkgRRipkryreNLNNhlQSqPKDD 62   Saccharomyces...
EFC49970        5 PPPGYVAGIGRGATGFT---TrsdigparlpsrftqpqgsssnstteeeneqetnqtfDEwsg-yggNILGrvTG-VEDE 79   Naegleria gru...
XP_011276801   11 APIGYIAGIGRGATGFT---Tradvgagrlpp----------------qqrdigsddeDNyqdvdedGLLG---DkTLNK 68   Wickerhamomyc...
XP_001483052   11 APKGYVAGIGRGATGFT---Tsadtgavr----------------------ieddiedDGpkidddsGLLA--RRgKGDA 63   Meyerozyma gu...
CCE73277       11 APDGYIPGVGRGATGFT---Tsadsgglafqqglvle---------------saseddeaqntnnddGILG--SKkHQDK 70   Millerozyma f...
XP_006687813   11 APAGYVAGVGRGATGFV---Tsadagglrsvrpfe------------------psdseddngdnnslGLLG-----GQSK 64   Yamadazyma te...
Q6BSY2         11 PPPGYVAGIGRGATGFT---Tsadagsvriqpgvvvld-------------neeedingnaedenddGLLG--KKlNRDQ 72   Debaryomyces ...
XP_002493977   11 PPPGYVAGLGRGATGFT---Tqadvgtgrivpasfs-------deesddedfvddrfkDAdetenglNGFK-----EKDD 75   Komagataella ...
XP_003646725   13 PPKGYVAGVGRGATGFS---Trangdrsdgsqqp------------ariqnksssdgmNRfdgstgiRARRnaGSgGGGV 77   Eremothecium ...
XP_002180133   79 APQNYVPGAGRGAGSMGaagTggpata--------------------------tvgsyDAfggyqerPVNE--VPgQYDE 130  Phaeodactylum...
5ZWO_N         63 EDDEAANVFKTLELKLAQKKKKRANEKDDDNSVd--------------sSNVKRQFADLKESLAAVTESEWMDIPDATDF 128  Saccharomyces...
EFC49970       80 EDKEADSIWSAISQRMENKKKRKNVTENENQTSkyakysvltssldsqkPKIAATFSDIKEELKYLSKEEW-NIPEVSgs 158  Naegleria gru...
XP_011276801   69 EDEEADEIYQEIDNRLKNRNKRRISPNDDATTTgnngn-------ddnlTKISNQFVDLKKNLSSISEDQWANLPEVGDL 141  Wickerhamomyc...
XP_001483052   64 AEEEADKIYEDIERRLLEKKRKKNEQLVERPPS----------------DDPVSQFVDLKRDLSQVTRDQWAALPEVGDL 127  Meyerozyma gu...
CCE73277       71 DDLEADKVYEEIERKLMKKKGNKEPDEVTKKDDs---------------VGMKEQFSDLKRALTNVSDFEWQNLPEAGDF 135  Millerozyma f...
XP_006687813   65 DDEEADRVYDEVERRLQKRHKNTSQLEVVQQDEe---------------NQIAQQFTDLKRHLAHVSQDEWANLPEASDF 129  Yamadazyma te...
Q6BSY2         73 DDEEADKIYEEIDRRMKRKRKDTPDDETSLEAV----------------NHTKEQFADLKRALSSVSDEQWESLPEVGDL 136  Debaryomyces ...
XP_002493977   76 SDNEADQVFAEIEERLKRRNKRKNEVQEDEEPL----------------DEIKKNFQELKKNLTSISEEEWFNLPESGDL 139  Komagataella ...
XP_003646725   78 EEAEADAIYTDIEKRLASRRNDKMASTGGVSVS-----------------KIGEQFVELKRNLAQVSEQEWLAIPEAGDI 140  Eremothecium ...
XP_002180133  131 DDDEADRIWAAIDERVQSRKRKSQQRKEETVATsaet--------dnarVRIGSQFRELKEKLKDVSEDQWAAIPDVGDH 202  Phaeodactylum...
5ZWO_N        129 TRR 131  Saccharomyces cerevisiae S288C
EFC49970      159 avn 161  Naegleria gruberi
XP_011276801  142 TKR 144  Wickerhamomyces ciferrii
XP_001483052  128 TRR 130  Meyerozyma guilliermondii ATCC 6260
CCE73277      136 TRR 138  Millerozyma farinosa CBS 7064
XP_006687813  130 TKR 132  Yamadazyma tenuis ATCC 10573
Q6BSY2        137 TRR 139  Debaryomyces hansenii
XP_002493977  140 TRK 142  Komagataella phaffii GS115
XP_003646725  141 TRR 143  Eremothecium cymbalariae DBVPG#7215
XP_002180133  203 SIK 205  Phaeodactylum tricornutum CCAP 1055/1
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