Conserved Protein Domain Family
Castor_Poll_mid

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pfam06241: Castor_Poll_mid 
Castor and Pollux, part of voltage-gated ion channel
This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.
Statistics
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PSSM-Id: 399327
Aligned: 11 rows
Threshold Bit Score: 159.054
Threshold Setting Gi: 428248773
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:GEI7407_3619 284 HDLISRIVVQTCRQSGLSTVYIDLLNFSGDEIYFREEPALQGKTYGQALLAYHHSAVIGIqkAD--GTLQLNPGSETCLQ 361  Geitlerine...
EEF45191         315 ENVVSKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGIKYRKLRRGFQEVVVCGL--YRn-GKIYFHPSDDEILQ 391  castor bean
EEC74570         552 EMAASKLFVQCSRQKGLIKIYRHLLNYHKNVFNLFSFREVVGMKYVDVRRRIPDAVVCGI--FRs-GMMHFHPCEDEVLT 628  long-grain...
XP_004985601     436 EMVASKLFVQCSRQKGLLKIYKHLLNQRKNVFNLFSLTGLGGMKYMDVRRKLHDAVVCGI--FRs-GKIYFHPSEDELLK 512  foxtail mi...
KRG92433         439 ENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSLPNLEGMTYRQIRHRFQEAVVCGL--YRs-GKIYFHPNDGEILQ 515  soybean
jgi:Cri9333_3741 271 QELISRILVQTSRQSGLSVVYMDLLDFNGNEIYFKEEPLLQGKTYGNALLAYNNLAVIGIkhSN--GKIKLNPPQEKPLE 348  Crinalium ...
XP_001755645     164 KDVITRLMIQCARQPGLAQVWKDILGFDKAEFYIKRWPELDGMRFIDTLISFPDAIPCGIkvASr-SKIVLNPDDEYILA 242  Physcomitr...
EFJ33201         309 HDVIGRLMIQCARQPGLAQIWEDILGFDNAEFYLKRWPQLVGMTFEDVLVSFPDAIPCGVkvAAnaGKIALNPDDDYIIC 388  Selaginell...
BAS75433         389 HDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPELDGMRFGDVLISFPDAVPCGVkiASkaGKILMNPDNDYVLQ 468  Japanese rice
CBI29714         429 HDVIGRLMIQCALQPGLAQIWENILGFENAEFYVKRWPQLDGMCFEDVLISFPEAIPCGIkvASdgGKIILNPEDNYVLR 508  wine grape
XP_018683427     216 EMVASKLFVQCSRQKGLLKVYRHLLNYRKNVFNLCSFSCLIDSKYKYARQAIQEAVVCGL--FRs-GKIYFHPNDDEVIT 292  wild Malay...
jgi:GEI7407_3619 362 AGDRLIVISEDDDTTQLNPADQaPID 387  Geitlerinema sp. PCC 7407
EEF45191         392 QTDKVLFIGPVHGRRRPEIAYS-SVF 416  castor bean
EEC74570         629 ETDKLLLIAPVSWRRRAQSTFS-NSP 653  long-grained rice
XP_004985601     513 ETDKLLLIAPVHGRRRPVYTVL-STP 537  foxtail millet
KRG92433         516 QTDKVLFIGSLRDTNTKKPEVI-LDG 540  soybean
jgi:Cri9333_3741 349 PGEQLVVISEDDRTIKGAEITHpIID 374  Crinalium epipsammum PCC 9333
XP_001755645     243 EGDEVLVIADDDESYAPSTSLP-DVH 267  Physcomitrella patens
EFJ33201         389 EDDEILVIAEDDDSYFPS-SLP-KVK 412  Selaginella moellendorffii
BAS75433         469 EGDEVLVIAEDDDTYVPA-SLP-QVR 492  Japanese rice
CBI29714         509 EGDEVLVIAEDDDTYAPG-PLP-EVH 532  wine grape
XP_018683427     293 QTDKLLLIAPVYGEKMPQMLLP-DAS 317  wild Malaysian banana
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