1PC6


Conserved Protein Domain Family
NinB

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pfam05772: NinB 
NinB protein
The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.
Statistics
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PSSM-Id: 399057
Aligned: 14 rows
Threshold Bit Score: 139.78
Threshold Setting Gi: 160364251
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1PC6_A               5 TFEIRSPAHQQNAIHAVQQILpdptKPIVVTIQERNRSL---DQNRKLWACLGDVSRQVEW----HGRWLDAESWKCVFT 77 
zhongguo:PT7_P074    5 VFNLVSPLVRRNAAHAIANVP----DGYRCELRPRTRTL---DQNSLLWSCLNDLARQVEWpingKQERLSPHDWKDIMT 77  Pusillimo...
WP_011871693         4 HFVLRDNHIKQRAQHAILQAP----EGYVCTIKPATRSL---EQNALLWPLLQTLSKNVDW----YGNKLTDEEWKDVLT 72  Herminiim...
hku:LHK_01507        6 FYIPKPAAVREQMTRAYRTACeladSGEALEVTVRTRSLrsaQANALMWVRLGELEEQTDW----HGIRLTAEEWKDLLS 81  Laribacte...
WP_002440512         4 QYTLINDAIKRNAIAHIQSLPvdsrSPLIVEAREETRTE---KQNRLMWPLLKDLSEQVVW----YGEKLEREQWKDLIT 76  Shimwelli...
CAX60727             4 TFVLRDSNIRQHIISTIQQLPanfsKPYQIVIQEDTRSL---AQNRMLWSCLNDVSRQVIW----YGRKMDSESWKHVFS 76  Erwinia b...
Q32DW5               4 TIFLRTKQQQQAAINAILSTPldkdKPVTIRITDYKRNL---DQNAKFHAMLADIARQVQW----CGKWLKPEQWKVLLI 76  Shigella ...
Q2NV07               6 SFLLRDERIRKNLKVFIDSLPtdehRPLEITINDSKRSE---TQNSLLHALCTDVSRQVLW----ADKPRSMLDWKALFV 78  Sodalis g...
REF_pohc:D11S_2250  30 PFFLRDQRIKNNCLDLIKELPtddkKPLVVKIQPMTRNL---EQNAKLHAMLSDISNQCEF----GGEKRDINTWKMIFC 102 Aggregati...
ACL32274            13 KYFLRTEQIKNNALEFVKALPidekKPLVVDVKPATRNL---KQNAKFHAMCVDIARQVQF----NGEWLPLEAWKVLLI 85  Glaessere...
1PC6_A              78 AALKQ------QDVVPNLAGnGFVVIGQSTSRMRVGEFAELLELIQAFGT 121
zhongguo:PT7_P074   78 ASLWQe-----NRVAMGVRG-GFVMLGRRTSTMSVRAMTELVDFIHAFGD 121 Pusillimonas sp. T7-7
WP_011871693        73 ASLKK------QKAVPGIDG-GFVVCGQRTSTMSKADFSELVELIYAFGA 115 Herminiimonas arsenicoxydans
hku:LHK_01507       82 AGLVV------SKVVPNIDGtGFVIVGQRTSKMSVKQMNDLIALIEAFGS 125 Laribacter hongkongensis HLHK9
WP_002440512        77 VLVNQtqkgesQKSAPGIGG-GRVYFGVRTSKSSKRYLCDVIEAIYWFGT 125 Shimwellia blattae
CAX60727            77 ASLKK------QDTVPGIDG-GFVVLGQSTSKMRVSEMRDLITLIHAFGA 119 Erwinia billingiae Eb661
Q32DW5              77 SGHAVatk-qeADVLPGLEG-ECVNIRESSAQMSVKRMASLIEYTTAWAI 124 Shigella dysenteriae Sd197
Q2NV07              79 SGHAIatg-rpGEVVTGLEG-EFCSIRESTAQMGVKRMNSLIEYAQAWAV 126 Sodalis glossinidius str. 'morsitans'
REF_pohc:D11S_2250 103 SAHRIatg-dkAEMAIGLEG-EVINLRESTAQMSVKRMASLIEYVTAWGV 150 Aggregatibacter phage S1249
ACL32274            86 SAHAEatk-egSCLVTGLEG-ELVNIRESTAQMSVKRMASLIEYATSWGV 133 Glaesserella parasuis SH0165
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