Conserved Protein Domain Family
Auxin_canalis

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pfam05703: Auxin_canalis 
Auxin canalisation
This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalisation by recruitment of the PIN1 auxin efflux protein to the cell membrane.
Statistics
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PSSM-Id: 399016
Aligned: 39 rows
Threshold Bit Score: 160.639
Threshold Setting Gi: 685257311
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004247195  15 PESPKAPMEFLSRSWSASALQVCKALTTTSslssssslptktnnnnnsvvvtipeniisvveeedsANKLAGNTFSFASS 94  tomato
ERN07162      11 tvdpvtlrhSLSRCWSNSAISVFNS--------------------------------------------------MLPFS 40  Amborella trich...
XP_006343563  10 sqahpETMDFLSRTWCNFAVQ----------------------------------------------------------A 31  potato
XP_004245183  38 PETPTESMEFLARSWSLSAKELSKALSHTK------------------------------------QTSYVDEKMSFSSL 81  tomato
AQK54094      57 vQTPMEPMEFLSRSWSVSASEISKVLA---------------------------------------GGVGGRRSSNFVVD 97  Zea mays
KQK00615      32 PQTPVEPMEFLSRSWSVSASDISKVLAV--------------------------------------GGGGRRSSNNYVVD 73  stiff brome
EER94492      43 PQTPMEPMEYLSRSWSVSASEISKILVG--------------------------------------GGGKKSSAAVAAAS 84  sorghum
XP_003562239  35 lQTPMEPMEYLSRSWSVSAEEISKALLL--------------------------------------SGSNKRT-FFAATD 75  stiff brome
EMS49385      38 PQTPMEPMEYLSRSWSVSANEISKALLL--------------------------------------KGSSKRS-FFAPVD 78  Triticum urartu
VAI11372      37 PQTPMEPMEYLSRSWSVSADDISKALLL--------------------------------------KGDTKRS-FFAPAD 77  durum wheat
XP_004247195  95 ATSQ-----LVLDRIMSQSmhngqEI-SPLTS-GRLSH-SSGPlngslteeTDSPPVSPSe---EFEDVVkYLKANSTLQ 163 tomato
ERN07162      41 HQPHnqlqkSIVQNFADHLkt-------eIPVdDRQMD-------------FNDEDMNRRmpawSSDELKtWIWLQHAIH 100 Amborella trich...
XP_006343563  32 FQPEmqdqaLILHE-NSIKnln-idNkPPLPKmEKSMK-------------MDDAD--NSippwKSNDVKsWIWMQQAMH 94  potato
XP_004245183  82 Q----------GQHGKTSImeepqE--QPLPN-------------------SDSPPVSPR----GSDDTKeLFLLHQALN 126 tomato
AQK54094      98 RLSG-----MLMPETLALAas------ssSAGtNNISPrKRTL--------RSRSAISAHq------------------- 139 Zea mays
KQK00615      74 RLSG-----ILMPETLALA----------AASgTNPSPhNHKRt------cRSRSAIAAH-------------------- 112 stiff brome
EER94492      85 RLPPe----VTIPELSVLAttsssIVpLP------CHHqQHRD--------ARRSSMSSGh------------------- 127 sorghum
XP_003562239  76 RLMPqlpqmAAITETETPAlvvvpV----SASsHHQFQqQHLD--------ATRNSISCH-------------------- 123 stiff brome
EMS49385      79 SLLLpr--tSALHDTET-SsykllA--TPAASsQQLQR-QHLD--------ATRSSISCR-------------------- 124 Triticum urartu
VAI11372      78 ALLPp----SPMPETMTSSsyellA--APAASsHHQIHhQHLDa-------KGRGSISCH-------------------- 124 durum wheat
XP_004247195 164 PLFTnvrtgytg---savglapnTPGGKTVGRWL---KE----RREKKKEESRAQNAQLHAVVSVAGVAASVAAIAAATA 233 tomato
ERN07162     101 PELNldrclrkrwlnmiptkeilLHPGESIRRWL---KE----MKQRKKEEERLRKAEAHAAVSVAGVAAALAAISAENA 173 Amborella trich...
XP_006343563  95 PEVNynsyfqkk----wmpwkvgPLKNVSIKKWI---KE----IKQKRKEEKRLQKAEVHAAISVAGVAAALAAIAAENL 163 potato
XP_004245183 127 SDFLsshhllk------aglyrtVMRGKTMGRWL---KD----QKEKKKQELRTHSAQVHAAVSVAGVAAAVAALATLSV 193 tomato
AQK54094     140 ----------------------vHHTVHAIGKWFh-hWD----AGSSKVDKARAERARVHAAVSVASVAAAVAAVAVAAG 192 Zea mays
KQK00615     113 --------------------------HHTIGRWFh-hRD-----GSSRVDKARAERARVHAAVSVASVAAAVAAVAANSE 160 stiff brome
EER94492     128 ----------------------yHHHHQSIGKWFqvhHRetcrAKQSGKEKQRADKAHVHAMVSVARVAAAVAAVAASTA 185 sorghum
XP_003562239 124 -----------------------HQHANSVSRWFr-rKEttrrAKCGRKEKARADKAHVHAMVSVARVSAAVAAVTAATS 179 stiff brome
EMS49385     125 ------------------------RHSNSVTRWYfqhKEa---AGHRGRDKARADRAQAHAMVSMAQVSAAVAAVTAATS 177 Triticum urartu
VAI11372     125 ------------------------RHSNSVTRWYfqhKEa---AKHGRKEKARADRAQAHAMVSVAQVSAAVAAVTAATS 177 durum wheat
XP_004247195 234 -SASSTA--KDEQMAKTDAAVASAAMLIAAQCVEAAEVMGADRDHLMSAISSAVNVRSHGDISTLTAAAATALRGAATLK 310 tomato
ERN07162     174 -ANQCGH-------NPRDSAMASAAALVASQCIEIAQSMGAKRDEIAAALASAVSTKSTGDIITLTAVAATSLRGVAALK 245 Amborella trich...
XP_006343563 164 -NHDQSG-------RTKESAVASAAALVAAQCAKVAEAMGAKRDQISSVIGSAMTGTSASDILTLTAAATTSLRGAETLK 235 potato
XP_004245183 194 -TSPEQSitKHNTSSKMSTAIASAAALVASHCIEIAEDMGAEQDQILSVVNSAINARTSGDIMTLTAGAATALRGAATLR 272 tomato
AQK54094     193 aSPEVDV---TDDGARMGSALASATQLLASHCVEAAELAGADHDQVASAVETAVDVRSPGDLLTLTAAAATALRGAAAMR 269 Zea mays
KQK00615     161 -DNDME----TMEDAKMDAALASATQLLASHCIEFAELAGADHDQVASAVEAAVDVRSPGDLMTLTAAAATALRGATALR 235 stiff brome
EER94492     186 -TSSDS----TQAATKMATAMASATELLASHCVEAAQLAGARHDQVAAAVQAAVGVRSPGDLMTLTAAAATSLRGAATLK 260 sorghum
XP_003562239 180 f---------DNQNSKIAAAMASATELLASHCAEVAQIAGAGHEQVSSAVRSVVDVASPGDLITLTAAAATALRGAATLN 250 stiff brome
EMS49385     178 c---------DSQDSKIAAAMESATKLLASHCAEAAQLAGAGHEQVSSTVQSAVGVTGLGDLMTLTAAAATALRGAAALK 248 Triticum urartu
VAI11372     178 f---------DNQDSKIAAAMASATELLASHCAEAAQLAGAGHEQVSSAVRSAVGVTGPGDLMTLTAAAATALRGAATLK 248 durum wheat
XP_004247195 311 ARAL--KEVWNIAAVIPIEKG 329 tomato
ERN07162     246 ARPAhkVRGNHGFSVIPYlev 266 Amborella trichopoda
XP_006343563 236 ARSGykNILNGSTPVLPIEDS 256 potato
XP_004245183 273 ARLQ--KGNGAAAIaladegv 291 tomato
AQK54094     270 HRAQ--REARSRAAVAPYDKA 288 Zea mays
KQK00615     236 LREQ--REAKSKAAVAPFDKS 254 stiff brome
EER94492     261 QRVQ--RETRSNASVLPYEKA 279 sorghum
XP_003562239 251 KRVQ--LETRSNASVLPCEKA 269 stiff brome
EMS49385     249 KRIQ--REARSNARVIPYDKA 267 Triticum urartu
VAI11372     249 KRVQ--RESRSNASVIPYEKA 267 durum wheat
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