Conserved Protein Domain Family
VQ

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pfam05678: VQ 
VQ motif
This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.).
Statistics
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PSSM-Id: 399000
Aligned: 94 rows
Threshold Bit Score: 36.2106
Threshold Setting Gi: 1559625257
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_020179730  53 EHTPKVVHARPHEFMTVVQRLTGKPAPA 80  Aegilops tauschii subsp. tauschii
XP_019070125  43 QPQPQVYNINKNDFRSVVQQLTGSPSQE 70  tomato
XP_006838599  53 PPQPPVYNISKNDFRNLVQQLTGSPSQE 80  Amborella trichopoda
RWW47335      55 PPPPQVYNISKNDFRSIVQQLTGTPSRD 82  Ensete ventricosum
KRH72387      72 eSQPQVYNISKNDFRDMVQKLTGSPGHT 99  soybean
KRH75619      45 QPQPQVYNISKNEFRDIVQKLTGSPSQD 72  soybean
RCV43544      32 PADTSVYVVHPTQFRAVVQQLTGAGAAS 59  foxtail millet
CDY49439      45 RMHPRVYRVEPVNFKELVQRLTGAPQDH 72  rape
XP_020872398  55 PMHPHVYRVEPVNFKELVQRLTGAPEHE 82  Arabidopsis lyrata subsp. lyrata
XP_017643446  93 QHQPPVYNINKNDFRDVVQKLTGSPAHE 120 Gossypium arboreum
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