5U0S


Conserved Protein Domain Family
Med31

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pfam05669: Med31 
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SOH1
The family consists of Saccharomyces cerevisiae SOH1 homologs. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes.
Statistics
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PSSM-Id: 398993
Aligned: 72 rows
Threshold Bit Score: 102.201
Threshold Setting Gi: 326477983
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5U0S_3               14 KSRFEIELEFVQMLSNPWYLNFLAQHkYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLHMLTLLKNPQ-FRNDISRADL 92  fission ...
EEA07149              6 RKRFVLELEFVQCLSNPDYLQWLEKEgYYKDPSFIRYLKYLLYWCNPPYSSYLSYPHCLRLLKALQSPS-FRAKLSNDEA 84  Cryptosp...
XP_001616018         32 RLRFECELEFVQSLSNIDYIKHLYENkYFSDKRFLNYLKYLNYWRTKPYIFYIHFPICLYVLEILNDGK-IDEYFSKESS 110 malaria ...
Q8IK88               35 KLRFECELEFLQSLCNIDYIKHLYENkYFNDYNFINYLKYLNYWRNKPYIFYVHFPICLYVLDILNNNN-TNIYFNHANS 113 Plasmodi...
EOB12316              3 NLRFEQELEFVQLLCNPDYIRWLFDEgYFDNDNFKRFLEYLNYWKTDEYKIFLTYPTCLNILDILNRED-VKDILKDESF 81  Nosema b...
Q8SU76                3 gSRFERELEFVQLLCNPDYLRWLTREgHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLAVLEHLNSEN-INDMLSDENF 81  Encephal...
WGS:AFBI:EDEG_01816  23 QIRFQKELEFLQLLCNPQYLQHLYNNnFFKNEDFIKFLEYLKYWKMEPYRNFIIYPYSLEILDLCLDTK-FIEELANEQT 101 Edhazard...
ELA46636              2 lTKFEKELEFVQLLCNPYYLQYLYQKgYFEDSEFRRFLRYLEYWKEKPYSNFLIYPQSLIILDALNNNEeFINKLDDEKI 81  Vavraia ...
EGG08607             25 QTRFEEDLEFVQSLANPHFVQELTLKgILASEPMVNYLNYLKYFHDPQYAVFIRYPNCLFILDLLNKSEkFRTVIESQES 104 Melampso...
EDO07806             27 QMRFEAELEFVQCLGNPHYLHFLATRgYFEDRRFRAYISYLQYFRLPQYIQYVKYPYCIRILELLLDDS-FVQSLSNQMA 105 Babesia ...
5U0S_3               93 SKQVNDEIYYEWLGK 107 fission yeast
EEA07149             85 IQTIRDQQSFQWVSI 99  Cryptosporidium muris RN66
XP_001616018        111 FNNFVYYLKLHWLFY 125 malaria parasite P. vivax
Q8IK88              114 FQNFIYYLKLHWLYF 128 Plasmodium falciparum 3D7
EOB12316             82 YVKLGSEQYYLWKDR 96  Nosema bombycis CQ1
Q8SU76               82 FLALGEQQYFIWLNK 96  Encephalitozoon cuniculi GB-M1
WGS:AFBI:EDEG_01816 102 YMILNEQIFNLWNns 116 Edhazardia aedis USNM 41457
ELA46636             82 LEFVEEQLRFYWLHK 96  Vavraia culicis subsp. floridensis
EGG08607            105 AQFLSDKLIQNWIt- 118 Melampsora larici-populina 98AG31
EDO07806            106 IDAIEHQLMAHWICF 120 Babesia bovis
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