4KU0


Conserved Protein Domain Family
PAAR_motif

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pfam05488: PAAR_motif 
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PAAR motif
This motif is found usually in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.
Statistics
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PSSM-Id: 398895
Aligned: 142 rows
Threshold Bit Score: 45.2462
Threshold Setting Gi: 262082746
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4KU0_D                 11 AGHEAWPPTVVN---ATQ-------SKVFTGGIAVLVAGDPI-----------------TEHteikkpyethggVtQPRT 63  Escher...
WP_015103868            7 AGDPTAHPGVVGp--PGV-------PTVLIGGMPAAVVGNPHvcsfpglp-phpptviaPP-----------------GC 59  Saccha...
EST32456               14 VGDPTGHPGTVGp--PGV-------PSVLIGGKPAATVGTIHncaspaa---hppsaiaPP-----------------GS 64  Strept...
WP_014181550            7 VGDPTGHPGVVGp--PGE-------PTVLIGGRPAATVGTPHqcsapaa---hppsqiaPP-----------------GS 57  Strept...
AORICAS:Z0003246        7 VGDPTGHPGVIVg--PGV-------PTVLIGGVPAATVGTPHtcsfpppa-vhpptpivPP-----------------GC 59  Amycol...
jgi:Amir_5383           7 VGDPTGHPGTVAp--PGV-------PTVLIGGVPAATVGGLHtcafpgvp-phpptpilPP-----------------GC 59  Actino...
mmlSJTU:pSCATT_p13550   7 TGDATDHGGVITtppPGAva----vETVLIGGRPAAVTGSLHvcpahpel--gpanvilPGA------------A-TGGP 67  Strept...
CeBiTec:B446_06020      7 TGDPTNHGGVIAtppPGAal---kvATVLIGGRPAAVVGSVHtcampphlalgpgnvimPNP------------A-AVTA 70  Strept...
CCA59126                7 TGDPTNHGGRIAtppPGAaa---kvATVLIGGLPAAVVGSLHvcvvpphaalgpgnviiPNP------------A-GLAS 70  Strept...
WP_015102572            7 TGDKTSHGGTLGp--PVSpalaakvLTVLIEGVPAAVVGSVHacpkipdpllgpsnvllPR---------------PAPP 69  Saccha...
4KU0_D                 64 SKVYVTGKKAVQMADPISCGDTVA 87  Escherichia virus T4
WP_015103868           60 PTVLIGGRPAARTGDLSACGAPIV 83  Saccharothrix espanaensis
EST32456               65 SSVLIGGSPAARVGDLSGCGSPVV 88  Streptomyces niveus NCIMB 11891
WP_014181550           58 ATVLIGGQPAARVGDTAGCGSPIT 81  Streptomyces
AORICAS:Z0003246       60 PTVLIGGLPAARMGDLAACGAPIV 83  Amycolatopsis keratiniphila
jgi:Amir_5383          60 PTVLLGGKPAARLGDLASCGAPIV 83  Actinosynnema mirum DSM 43827
mmlSJTU:pSCATT_p13550  68 GLVLIGGLPAARARDRTACGAQVV 91  Streptomyces cattleya NRRL 8057 = DSM 46488
CeBiTec:B446_06020     71 GTVLIGGLPAARARDQTSCGAQIV 94  Streptomyces collinus Tu 365
CCA59126               71 GPVLIGGLPAAKARDQTTCGAMIV 94  Streptomyces venezuelae ATCC 10712
WP_015102572           70 PSVFIGGAPAAVVGDRAVCQATVV 93  Saccharothrix espanaensis
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