Conserved Protein Domain Family

pfam05391: Lsm_interact 
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Lsm interaction motif
This short motif is found at the C-terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation.
PSSM-Id: 398843
Aligned: 16 rows
Threshold Bit Score: 36.7304
Threshold Setting Gi: 641648416
Created: 20-Apr-2021
Updated: 29-Sep-2021
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
Format: Row Display: Color Bits: Type Selection:
5VSU_A        425 IPDKQEQMSNDDFRKMFLG 443  Saccharomyces cerevisiae S288C
Q9USY2        996 EMQIDAPKSNDDFRKMFLK 1014 Schizosaccharomyces pombe 972h-
EFH43929      801 PSADETPKSNDEFRNMFLK 819  Arabidopsis lyrata subsp. lyrata
XP_009137894  804 IAVDETPKSNDEFRNMFLK 822  field mustard
Q6CNP2        413 ASQNDKKLSNDDFRKLFLS 431  Kluyveromyces lactis
EKC27682       53 ASATATKMSNDDFRKMLLK 71   Pacific oyster
RMC05818      910 PPAEPKKMSNADFAKMLLK 928  Hirundo rustica rustica
XP_003477885  942 AASEAPKMSNADFAKLLLK 960  domestic guinea pig
XP_008182141  252 SADDKTPLNNEDFRKMLLG 270  pea aphid
EFO93770      843 SSSSSTPLSNDQFRKLFMR 861  Caenorhabditis remanei
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