3KMV,1WD3


Conserved Protein Domain Family
AbfB

?
pfam05270: AbfB 
Click on image for an interactive view with Cn3D
Alpha-L-arabinofuranosidase B (ABFB) domain
This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant-cell-wall poly-saccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyzes 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains.
Statistics
?
PSSM-Id: 398781
Aligned: 92 rows
Threshold Bit Score: 140.368
Threshold Setting Gi: 158114198
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3KMV_E                          11 AKFQSYNYPNMYIRHANf-DARIDE------NVTPEMDSQWELVPGLANSGdgYVSIQSVNypGYYLRHSNYDLSLEKND 83  Hungateiclostridium thermocellum ATCC 27405...
BAL88566                       385 sSLEAANSPGRYATVAGd-LGVLTAvgp-gnTVTARQQATFEVVAGLADAE--CFSFRVAG--GRYLRHASWRVRADRAE 458 Actinoplanes missouriensis 431...
CCA60031                       378 rSLESVDEPGLFVTSAGd-HATLGRvsa-ssGAQTRNRGTFTVVAGLADTR--CVTFRAAD--GRYLRHSYLRLRLSADD 451 Streptomyces venezuelae ATCC 10712...
KoreaUniversity:VAB18032_10860 401 wSLESARKAGRYLSHDGk-YATLGTvdg-ssPKSARQRATFAVQRGLADPN--CVTLLATD--GRYLRHWGMQVQLSPEE 474 Verrucosispora maris AB-18-032...
jgi:Franean1_7065              307 lslRSGDLGHQYWRLVN--DVVCLEvvtsdsSTAVRREATFTVVRGLADPN--GFSLRASD--GRFLRQGRSRLHLSGFG 380 Frankia sp. EAN1pec...
WP_012999512                   317 RSLQSVNFTGRYAVARSdnLGYVDPvts-ssTTAVKQSATFTVVPGLADAN--CYSFRTST--GRYLRHWDYRIRSDADD 391 Streptomyces scabiei...
CCK25703                       323 RSFQSANYPTRYWQQQSs-LLNLPVvta-ssTAAEKQASSFTVTAGLADAN--GHSFRDAS--GNYLRHYDFRARFDANN 396 Streptomyces davaonensis JCM 4913...
Q82P18                         331 RSFQSVNYPTRYWQEQSs-LLNLPVvss-aaSSAEKAASAFTVVAGLADAG--GYSFRDAA--GNYLRHYDYRARFDADD 404 Streptomyces avermitilis...
Q829S7                         178 KSVRSVNYPDRYWHLGGd-TGRLDPvss-gsSATTRQDATFKLVKGLADAS--CYSFATAD--GTYLRHSRFRLRADRND 251 Streptomyces avermitilis...
CeBiTec:B446_09960             142 rSVRSLNHPDRYWHVSDg-LVRLDPa----gSAAERRDATFTVVKGLAKAG--CYSFATAD--GGYLRHRNFLLRAEHDD 212 Streptomyces collinus Tu 365...
3KMV_E                          84 GTSLFAESATFKIVPGL-AdPSYiSFQSYNFPTRYIRHYNYLLRLDEIV-TELDRQDATFKI 143 Hungateiclostri...
BAL88566                       459 DTPLFRGDATFCPQAG--EvAGSlRLEASNYPGWFLRHRGDELWVDQSDgTAAFRADGSFLp 518 Actinoplanes mi...
CCA60031                       452 GSELFREDATFCPRPG--SvAGSvTLHAHNYPGSVLRHRDGGIWLDGSDgTRTFAGQASFIV 511 Streptomyces ve...
KoreaUniversity:VAB18032_10860 475 NSTIFREDATFCPEPG--AsSGSvTLRSYNYPSHVVHHRDGGFWLDVPDgSSAFAADSAFVV 534 Verrucosispora ...
jgi:Franean1_7065              381 ATESFDRDATFAVRRGLgA--RSvALESYSHPGRYIRRRGRELWLEPYneSYRFRTETSFGi 440 Frankia sp. EAN...
WP_012999512                   392 GTTVFDKDATYCARPG--TaSGSvRLESYNYPGRYIRHYNYELRLDTYEaTDTFRTDSSFTA 451 Streptomyces sc...
CCK25703                       397 GTTTFARDATFIARTG--SaTGSlRFESYNYPGYYLRHYGYQLRVERSDgTDLFRQDSSFVp 456 Streptomyces da...
Q82P18                         405 GTPTFAKDATYVARTG--TaAGSvRFESYNYPGYYLRHYNYQLRVDPTDgTDQFRQDSSFNp 464 Streptomyces av...
Q829S7                         252 GTALFKKDATFCPRTS--SySGAvMLESVNYPGRYLRHKDFLLRLDPYEnTGQYRADSAFQL 311 Streptomyces av...
CeBiTec:B446_09960             213 GSRLFEQDATFCPRTS--AfAGAvMLESVNYPGRYLRHQDFQLKLDPYQdTDLYRADSAFLL 272 Streptomyces co...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap