Conserved Protein Domain Family
Fip1

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pfam05182: Fip1 
Fip1 motif
This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor.
Statistics
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PSSM-Id: 398722
Aligned: 85 rows
Threshold Bit Score: 66.8008
Threshold Setting Gi: 224011990
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EKC27619     122 DFDLETlqsD--EKPWRKPGADITDYFNYGFNEDTWQQYCEKQRRLR 166 Pacific oyster
GAC75266     368 DIDLESl--A--DKPWRRYGADLTDYFNYGFSEDSWSVWRAKKEHMT 410 Moesziomyces antarcticus T-34
ELU38027     238 EVDLESl--S--AKSWRRPGANISDWFNYGFDEISWETYCMTRKKLg 280 Rhizoctonia solani AG-1 IA
CCA67157     155 DVDIAAl--E--SKAWRRPGADLSDWFNYGFDEISWEAYAARRKQLg 197 Serendipita indica DSM 11827
XP_003037006 147 DLDLAAl--A--DKPWRRPGADLSDWFNYGFDEISWEAYCYRRRDLg 189 Schizophyllum commune H4-8
Q5KHE4       248 DIDLSLf--EgsGQPWRQPGAVVSDWFNFGFDEHTFPKWVRYRTEMG 292 Cryptococcus neoformans
EKD02446     177 DVDVAQfegS--GQMWRRPGSDISDWFNYGFDEVTYPKFLKYRQDME 221 Trichosporon asahii var. asahii CBS 8904
EEB98991       9 EVDISAm--S--EKPWRRPGSDISDWFNYGFDEISWEAYCYRRREMG 51  Moniliophthora perniciosa FA553
Q4QJI4        64 GYDIALm--A--KRPWAEPGAKLSDYFNYGFNEQSWRVYCAMQEKGE 106 Leishmania major
Q57Z17        71 GYDIAQm--Q--KRPWDEPTANLRDYFNYGFNESSWRLYCSMQAEGe 113 Trypanosoma brucei
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