Conserved Protein Domain Family
Phage_prot_Gp6

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pfam05133: Phage_prot_Gp6 
Phage portal protein, SPP1 Gp6-like
This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes the old Pfam family Phage_min_cap (PF05126).
Statistics
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PSSM-Id: 398687
Aligned: 45 rows
Threshold Bit Score: 185.225
Threshold Setting Gi: 0
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
cebbi:LBUCD034_0946  65 YVSDHFNNQLPRILELERYYLAD--------NNihywlsNKRSNRADNRISSALARYITNIQVGYEFGTPLTFGYQNKDD 136 Lactobac...
Q8Y4Y0               29 KKVNANDEDYKYIDMWKRLYQGHyaewhnlnYE------HNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAA 102 Listeria...
Q9A0P3               30 PKIAISKLEYDRITTNLKYYKSDwdsv--------lylnTDGETKKRDLNHLPIARTAAKKIASLVFNEQAEIKVDDDAA 101 Streptoc...
SKLIDPC::KE3_1409    30 PKIAVSQEEYSRIQHNLTYYQSKfddv--------eyinSEGDVKRRKFNHLPIARTASKKIASLVYNEQAEITSDNKSV 101 Streptoc...
WP_013774284         32 PKIGIDTQEYIRINENMKYYANIypdv--------qyknSYGQDKRRSFNPLNLTKTAARRLASIIFNEKCEVVLDVAEE 103 Melissoc...
CCO12065             30 WKINIDPEELIRIENNFREYKNDypdi--------eyinSNNKSAKRKYMALNLRKMTAEMMSSLVFNEQTEIKVDAKAN 101 Carnobac...
WP_011904463         11 ELLAILERDLPTLRRVDDYLNGRhddpy------mparaDAEYRLLARRAITNMSLILVGTPAQALYVDNYRRGGTDRVA 84  Salinisp...
ABS03208             15 VLWPEWEQQRQHLDWIDRWarwvpde------iklprtaTAEHKRLAELSNTPWLSLVVTTTAQCLGVDSLKSSRDIGRD 88  Kineococ...
jgi:Srot_0064        23 RLFDELTRRAGRNQSRSRLYEGKyavk---------rtsTIPPEYFRMGIVLGWAAKAVDILARRCNLDGFTWADGDLES 93  Segnilip...
CBG73129             11 HLIQCHDREKPELTLLDSYYEGEqplsylapEL------QAEMDERIRQVVVNWPLLVADSLEERLDVEGFRFPDEAQAD 84  Streptom...
cebbi:LBUCD034_0946 137 Endtge---nviqAVDDFNQTNDEPYHEKIMGKNLANVGRAYELLYVPE---G---TKqpKITAIDPNSAFVVWSTdvEP 207 Lactobac...
Q8Y4Y0              103 Ee-----------FVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGk--K---NV--KVSFATADCMYPLSNDseNV 164 Listeria...
Q9A0P3              102 Ne-----------FISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG---D---KV--RVAFVQAPVFLPLQSNtqDV 162 Streptoc...
SKLIDPC::KE3_1409   102 De-----------FISYTLDNDRFNKNFERYLESGLALGGLAMRPYVDG---D---RI--RVAFVQAPVFLPLQSNtqDV 162 Streptoc...
WP_013774284        104 QsidketlakaneFLQSVLIDNNFFNLLELNLEKGIALGGFAMRPYIDAk--G---KI--KISWIRADQFYPLQSNtnEI 176 Melissoc...
CCO12065            102 Kga--------ndFIQKTFEHNDFKRNLAKYLEPMFAIGGLAVRPYVDTs-tG---EV--EFSWALANSFYPLRSNskGI 167 Carnobac...
WP_011904463         85 Ddt--------vlPEWLHWQESRLDARQTAVHRAALAYGHSFVLTERQA---G---RV--RSKGLSPLRTVAVYDDpaND 148 Salinisp...
ABS03208             89 Ldpq-------erGPWRTWVMNRFDQRQNAIHRAALTYGTAYNKIMPGQd--QrsgEPmaVMRGVSPRRMLALYRDpaED 159 Kineococ...
jgi:Srot_0064        94 L------------GSREVWSENLLGTESDSGVVSSLIHGPAFLVNTAGEaweP---KA--LIHVKDALNAVGDWNPraRR 156 Segnilip...
CBG73129             85 E------------ELWRIWQANRLDSRSHQGHLDGLVMRRAYVIVGAREd--D---PKtpLITVESPLDVYAEHDPrtGA 147 Streptom...
cebbi:LBUCD034_0946 208 VELFAVRYYa---VNVADETYYQIEVYTDNHIYHFTAGANPDS------------DWKLTSDEGHYFQ-QVP--LTEYRL 269 Lactobac...
Q8Y4Y0              165 DECVIANSF-----------HKNDKYYTLLEWNEWQDDIYTVT------------TELYQSDDPDELGgKVS--LKLLFN 219 Listeria...
Q9A0P3              163 SSAAVVIKS-------VKTINGKEVYYTLIEFHEWQSSDDyv-----------isNELYRSDDKAKVGsRVP--LSEVYK 222 Streptoc...
SKLIDPC::KE3_1409   163 SNAAILTKA-------IKSEGRKNVYYTLVEFHEWVTADGNEQgstkdksyyritNELYKSDISDALGqRVN--LPELYP 233 Streptoc...
WP_013774284        177 SECAIATKK-------TITIGNKQYYYTLLEFHEWENNAyi------------ieNELYKSESPETVGkRVP--LAEIYD 235 Melissoc...
CCO12065            168 TEGVVVFKT-------VVNSGKKTYYYTLLEFHEWEDGNIKIT------------NELYESEDSTIVGkRVPlgYNDQYK 228 Carnobac...
WP_011904463        149 DAPVAAITVtqwpKPGDKGSRGSARMWDGRREYTITFRSLTDAt-----------SVGITGKRVHGSS-ECP--VTRFAS 214 Salinisp...
ABS03208            160 DWAEYTIEV----GSKGSDDLRLVEVMDDEAVYRVSLDASTG-------------KIEYIDDSRHEVG-VVP--VVRYTN 219 Kineococ...
jgi:Srot_0064       157 LENLLSITD-----RDEEDRVTGFALYMDGLTVSAARDS----------------SGWAVERSDHKFG--VP---AEPLV 210 Segnilip...
CBG73129            148 VAAAVKRWCe---EEEGASPIEHATLYLPGATSWWTKDRSGVWaed-------tgDEGEPTRDDHGLG-EVP--VVPLA- 213 Streptom...
cebbi:LBUCD034_0946 270 ------------------------NEERVG-------AWETKLDEIDAYDQALSEMANSQEDFSNAMLMINGkvanhsgk 318 Lactobac...
Q8Y4Y0              220 diepvvplpkftrptfiyikpniaNNKNLTspl-gisVYANALDTLKTLDLMFDSFYQEFKLGKKKVLVPSSfvktaigl 298 Listeria...
Q9A0P3              223 dlkdeakvtdvtrpiftylktpgmNNKDINspl-glsIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESltaltvrt 301 Streptoc...
SKLIDPC::KE3_1409   234 dleqvtmfkdlsrplftylktpgmNNKDINspl-glsIFDNAKTTIDFINRTYDEFMWEVRMGQRRVIIPEQmtkvtaqr 312 Streptoc...
WP_013774284        236 dladtvkltglqrplftyfrtpgaNNKSLEspl-gmgIVDNSREILDQINLTHDQFSWEIQMGQRRVIVPAEwlrvnend 314 Melissoc...
CCO12065            229 dlletatitepskpilnylkpsgfNNFSLYspl-gigLCDNSSSVVKQINDTFDQFNWEIRMGQRTVLVSDHmlnhvpde 307 Carnobac...
WP_011904463        215 ------------------------CVDLEGrt---lgVIEPMIALQNRINQTVFDLLVAQTYGSFTVRTATGmapplktr 267 Salinisp...
ABS03208            220 ------------------------MLDLDGrs---fgEVEPFIVVAARANKTLYDRLLVQHFSSWKIRTVAGma------ 266 Kineococ...
jgi:Srot_0064       211 ------------------------YKPRAGrpfgssrINRAVIALLEQATRVAIRMEAHADTFSFPEFWMFG-------- 258 Segnilip...
CBG73129            214 ------------------------NRARLKkpg-gvsELKAVIPLSDAACKIATDMMVSAEYHATPRRVAFG-------- 260 Streptom...
cebbi:LBUCD034_0946 319 teqmldpkgqpVYLDNVSGgyt------nqSTTngkpnapvmvqkvldtk--anvlylkpymhdnpngSPTISNTSASYL 390 Lactobac...
Q8Y4Y0              299 d--gsttqyfdSTDEAFFLyq----------------------------------------------gDQDADGKSVKDI 330 Listeria...
Q9A0P3              302 adgdvvprprfESDQNVYIrm----------------------------------------------gGRDLDSSAIQDL 335 Streptoc...
SKLIDPC::KE3_1409   313 edgsitfkrrfETDQNIYTql----------------------------------------------gGGNMDANSIKDI 346 Streptoc...
WP_013774284        315 ----parpmlfDTAQNVLMgm----------------------------------------------yGDSSQTIGIKDV 344 Melissoc...
CCO12065            308 k--nqvmnpvfDPDVNVFKa-----------------------------------------------lRMDDTNEAIKDV 338 Carnobac...
WP_011904463        268 pvhqrgqepytYPDEPAVAgvdslgravdrDGWvlddngqrvildtapvvdpvtgqhvyeqvdisarrFLFAKDPQSKWG 347 Salinisp...
ABS03208            267 ---------kpEDDEEAARaklql----------------------------------------rqddLLVADDPDTKFG 297 Kineococ...
jgi:Srot_0064       259 -----------ATLADLAGgeknpnpwr--------------------------------vrmgrikgLPDDEETGVRAE 295 Segnilip...
CBG73129            261 -----------FGEDDFQDeqgrkvsafsr---------------------------iigrvwaterrRGSGEDGGADVI 302 Streptom...
cebbi:LBUCD034_0946 391 TKSLNAAEWQIYIQQLLSDIHKDTNTPDTTDQNFa-----ANASGVAMAYKLWGSDQEMSMSETLYQRGLRRRLRLLAIY 465 Lactobac...
Q8Y4Y0              331 SVEI---RSTEFIESINAMLRIYAMQVGLSAGTFtfd-enGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEV 406 Listeria...
Q9A0P3              336 TTPI---RADDYIKAINEGLSLFEMQIGVSAGLFsfd-gkSMKTATEIVSENSDTYQMRNSIVTLVEQSLKELVISIFEI 411 Streptoc...
SKLIDPC::KE3_1409   347 TTPI---RSNDYITAISEGLKLFEMQIGVSAGMFsfd-gkSMKTATEVVSENSDTYQMRNSIAALVEQSIKELCVSICEL 422 Streptoc...
WP_013774284        345 TTAI---RTVQYKDAIDHWIKEFEVQIGMSTGSMsya-ddGLKTATEVVSDNSMTYQTRSSYLTMLEKALDELIHAIFEL 420 Melissoc...
CCO12065            339 TSDI---RTDQYISAINQSLKMLEMQMQLSVGTFsfd-gkSFKTATEVVSENSLTYRTRNMQCNEVEKFIKGLIVSILEV 414 Carnobac...
WP_011904463        348 SL--DATPLGGFIDSLDMSFRQFSALAQVPPHHLlg--qiANLSAEALQAAETALARKVEEFRKLFGESWERVFRLAAEL 423 Salinisp...
ABS03208            298 TL--DETPLGGFLDAERQDRETLSAVSQTPSYAFgp---lINLSADAISAAKAGQTQKVAERQKSFGSSHVQSARLAAAE 372 Kineococ...
jgi:Srot_0064       296 VHQFPAASPQPHVDMFEHIAGQFAGETSIPVESLglvnraNPTSAESYIASREDLIAEAEGATDDWSPAFQRSFTRALAI 375 Segnilip...
CBG73129            303 QF--PEAQLKNFHDTINQLAQLVASLAGLPPHFLgyt-sqNPASADAIRSSESRLVKRAERRQREWGEAWEQVMRLALRI 379 Streptom...
cebbi:LBUCD034_0946 466 WNYVS-----STGIKVTndcn--padNV------TITFTPNLPKNNQETMTLIQGLnqTGKFSAQTLRELAEPITGip-- 530 Lactobac...
Q8Y4Y0              407 GKFIE-----AYSGEVVel------dTI------TVDFDDSIAQDEDTTINRYTTAknQGMIPLKIALQRAWNITD---- 465 Listeria...
Q9A0P3              412 AKAYD-----LYQSEVPsm------dNI------SISLDDGVFTDRDAELDYWIKVvnAGFGTREMAIQKVLNVTE---- 470 Streptoc...
SKLIDPC::KE3_1409   423 GKATG-----LYKGEIPel------eDI------SVNLDDGVFTDRNAELAYWMQMvsAGFAPQRLGIQKTLNVSE---- 481 Streptoc...
WP_013774284        421 AGYKD-----LFPDKQPsfelvdgtyQV------SVHFNDGLFVDKNKQLDEDLKVslAGMMPKKEFLKRNFGLSD---- 485 Melissoc...
CCO12065            415 SKATKvngkaLYDGDIPtf------dQI------SVDFDDGIFGSRDQKLEFYSKAktVGLVPTTEALKGIFKLTD---- 478 Carnobac...
WP_011904463        424 SGDL----------------------SLaqnylgEVIWRDMEMKSLGAVADGLGKMaeQLGIPRRGLWPRVPNVTR---- 477 Salinisp...
ABS03208            373 EGDE----------------------DIardvqlRVGWQDLEIRSISQAVDALGKAaqMLQVPPQALWSRIPGVEK---- 426 Kineococ...
jgi:Srot_0064       376 RNGLD-----SVPAEWV---------TI------APKWRSPIHLSRAAQADAG---------SKQLAAA--PWLADtevg 424 Segnilip...
CBG73129            380 RDGEW-----DPRVM-----------SL------ETVWRDASTPTVAQAADAA---------VKKYSAKIVPLRQTredl 428 Streptom...
cebbi:LBUCD034_0946 531 ------avQEQERSDDEGAQQDDR 548 Lactobacillus buchneri CD034
Q8Y4Y0              466 --------AEAEAWKEEIEKDVQA 481 Listeria monocytogenes
Q9A0P3              471 --------EKAQEIAAEINTGIVD 486 Streptococcus pyogenes serotype M1
SKLIDPC::KE3_1409   482 --------EEAKDYLVEINGELPP 497 Streptococcus lutetiensis 033
WP_013774284        486 --------ESAEEWLTALKEEQQE 501 Melissococcus plutonius
CCO12065            479 --------EESQKWFKRIQMEETG 494 Carnobacterium maltaromaticum LMA28
WP_011904463        478 --------QELEDWARILKEDSPE 493 Salinispora tropica
ABS03208            427 --------SDVDEWAAMSRSSDPT 442 Kineococcus radiotolerans SRS30216 = ATCC BAA-149
jgi:Srot_0064       425 lgllgldeQQIRLALSQRRRAQGS 448 Segniliparus rotundus DSM 44985
CBG73129            429 ----gysqAQIARMEEQDREAAED 448 Streptomyces scabiei 87.22
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