Conserved Protein Domain Family
Phage_holin_3_1

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pfam05106: Phage_holin_3_1 
Phage holin family (Lysis protein S)
This family represents one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Statistics
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PSSM-Id: 428307
Aligned: 21 rows
Threshold Bit Score: 82.2659
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ACQ67609          6 KEPGFWVALLAWIRGHqa---dFGYASLAALFSLWRNAWGKH--AWSRRLLDALSCSTLAFFSQPLLMMVeglfhgTLPA 80  Candidatus H...
P44188            4 KEPDVWALIWSWLQTNlssssaQSAF-WALFISLLRFGFMRKkpAIRYVLIDAAMCASIAGVAVPICTHL------FGHT 76  Haemophilus ...
WP_012738124      6 KEPGFWVALLAWIRSQqi---dFSYASLAALFSLLRNAWGKY--SWSRRLLDAFSCGTLAFFAQPLLSIVdsafdvSLSA 80  Candidatus H...
P03705            1 mkmpekhDLLAAILAAke---qGIGAILAFAMAYLRGRYNGG--AFTKTVIDATMCAIIAWFIRDLLDFA------GLSS 69  Escherichia ...
Q7N0Y0            6 KQPDIWMQLWLWLLSVke---qGIGAALAAAMAYLRGRYNGG--KFWTTIMDSIMCAMIAWFIRDALNFF------GMST 74  Photorhabdus...
WP_024912602      4 lkSDVISLIIPRACEYiq---pLIHAILAGVMALLNGAYRNM--KIRKCLLNACICALLAVTVRDLLSLI------GVKL 72  Chania multi...
ACQ68282          1 -mPNFCQTLLDILKHR------IIGAALAFMTALLRGLYQKK--SFNCSLLDALMCALFGSVAHELLLFL------GMKT 65  Candidatus H...
jgi:Rahaq2_3322   4 vpPGMLEETMKWIATYlp---tLYAAGAALSISALMSLYDGQ--SLLKTATGSLVCGIVTLTVAGSLEYL------GLPS 72  Rahnella aqu...
utah:Sant_P0189   4 viPIIIAHCSAWVVDYlp---tVFSSISSLLIAFFMGIYDGK--AVWKTMAEAFICGIFTLSISGSLEQL------GLPD 72  Sodalis prae...
CBV44075         10 KDPNNWQALIGLLASVwp---qIYAAGMACIVALVRGLQGGG--KPIKSILEAVLCGCLTLALVPVLEYF------GLNQ 78  Halomonas el...
ACQ67609         81 SAPQVLAIYIGYVGTDYIRARIQSFTQRK 109 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
P44188           77 EYSSFLGTMIGFVGTEKIREFLFKFINRR 105 Haemophilus influenzae Rd KW20
WP_012738124     81 SVPGVLAIYIRYVGTDYIWACIQSWTQRK 109 Candidatus Hamiltonella defensa
P03705           70 NLAYITSVFIGYIGTDSIGSLIKRFAAKK 98  Escherichia virus Lambda
Q7N0Y0           75 DLAYISSVIIGYLGTDYFGQILRKVVNNK 103 Photorhabdus laumondii subsp. laumondii
WP_024912602     73 QWANIASVLIGFLGIDYLSDLIKKLINKK 101 Chania multitudinisentens
ACQ68282         66 DYTWLISIVIGYLGTDYIGSWLKK---KL 91  Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
jgi:Rahaq2_3322  73 NAVTFIGASIGFMGADKVRNKVTGFIETR 101 Rahnella aquatilis CIP 78.65 = ATCC 33071
utah:Sant_P0189  73 NAVNLLGGIIGFVGVEKLRILIEGklykr 101 Sodalis praecaptivus
CBV44075         79 KLAVTVGAAVGFLGTEWIRGHAATILEtl 107 Halomonas elongata DSM 2581
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