Conserved Protein Domain Family
VirB3

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pfam05101: VirB3 
Type IV secretory pathway, VirB3-like protein
This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.
Statistics
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PSSM-Id: 398665
Aligned: 64 rows
Threshold Bit Score: 34.53
Threshold Setting Gi: 253987274
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013479727     6 DPFFRGCTRPPMFLGVPLSVFLVFAAILLIPAMwafa--frfAPLAIALCVCWVIGHLYMRQVTRKDDQRVLQWmlrlrv 83  Asticcacaulis...
Q2K2R2          11 NRIHRALSRPNLLMGADRELVLITGLAAVILIFvvltvysalFGVAVWIV-----IVGLLRMMAKADPLMRQVY------ 79  Rhizobium etl...
WP_013418752     7 TPLYRALHRPNLFLGGEREPVLLTAIICAGLAVsslnliaimIGAGLWLV-----LIGAFRMMAKADPFMTRVY------ 75  Rhodomicrobiu...
CBJ13317         6 IPIRRCGNRPSLFMGGDRELVMFSGLLSAVLIFaaqdwlaafAGLVIWFL-----SLKGLRLMAKSDPYMRAIY------ 74  Legionella lo...
Q9PBT5           6 IPIRRVGNRDNLFMGGDREMVMFSGLLCAVLIFvaqdwiaagFGLGMWFL-----ALWLFRKLAKADPRIRFVY------ 74  Xylella fasti...
CCE25742         6 IPIRRAGNRDNLFMGGDRELVMFSGLLAGALIFsaqdmratvFGVCLWFG-----ALFVFRLMAKSDPKLRYVY------ 74  Methylomicrob...
WP_012806828     6 IPIRRAGNRDNLFMGGDRELVMFSGLLAFALVFsaqelratvVGLLLWFG-----ALYALRIMAKADPRMRHVY------ 74  Candidatus Ac...
jgi:Desal_1707  12 VVIHRSLHRHTLVLGAERELVMSSALISFILVVvgkdlvsagAALFFWIT-----SVILLRMMAKEDPQMSQVW------ 80  Desulfovibrio...
jgi:Astex_2483  10 VPLHLSLTQPLLLGGAPRTLAIANGTVAAALGLglq---mwlPGLGLWLI-----GHTLAVFAARYDPDFVPVL------ 75  Asticcacaulis...
jgi:Rpic_5014   21 VPIRKTMLEKFLMGGIDRKLCAGELAILIFTAV---------GLRNPWVLLALPPTHLILWLATKRDPDQFNCY------ 85  Ralstonia pic...
WP_013479727    84 rraHA--PfRRHWG 95  Asticcacaulis excentricus
Q2K2R2          80 ---VRhiSyKHYYK 90  Rhizobium etli CFN 42
WP_013418752    76 ---LRqlRyGAYFP 86  Rhodomicrobium vannielii
CBJ13317        75 ---LRqrHyQVYYS 85  Legionella longbeachae NSW150
Q9PBT5          75 ---MRnrRyKAYYP 85  Xylella fastidiosa
CCE25742        75 ---LRsrRyKKYYP 85  Methylomicrobium alcaliphilum 20Z
WP_012806828    75 ---LRhrRyKPYYP 85  Candidatus Accumulibacter phosphatis
jgi:Desal_1707  81 ---LRrnAyQTIYP 91  Desulfovibrio salexigens DSM 2638
jgi:Astex_2483  76 ---LRhlRqKGYFa 86  Asticcacaulis excentricus CB 48
jgi:Rpic_5014   86 ---LRysKqGDFYE 96  Ralstonia pickettii 12J
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