Conserved Protein Domain Family
VirB3
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pfam05101: VirB3 
Type IV secretory pathway, VirB3-like protein
This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.
Links
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Statistics
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PSSM-Id: 428303
Aligned: 59 rows
Threshold Bit Score: 34.9081
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
jgi:Astex_2243     6 DPFFRGCTRPPMFLGVPLSVFLVFAAILLIPAMwafa--frfAPLAIALCVCWVIGHLYMRQVTRKDDQRVLQWMLRLRV 83 
jgi:Astex_2483    10 VPLHLSLTQPLLLGGAPRTLAIANGTVAAALGLglq---mwlPGLGLWLI-----GHTLAVFAARYDPDFVPVL------ 75 
jgi:CAP2UW1_4730   6 IPIRRAGNRDNLFMGGDRELVMFSGLLAFALVFsaqelratvVGLLLWFG-----ALYALRIMAKADPRMRHVY------ 74 
CCE25742           6 IPIRRAGNRDNLFMGGDRELVMFSGLLAGALIFsaqdmratvFGVCLWFG-----ALFVFRLMAKSDPKLRYVY------ 74 
Q9PBT5             6 IPIRRVGNRDNLFMGGDREMVMFSGLLCAVLIFvaqdwiaagFGLGMWFL-----ALWLFRKLAKADPRIRFVY------ 74  Xylella fas...
Q6LB35            11 SRIHRALSRPNLLLGADRELVLVTGLAAVILIFvvltwfsalLGLAIWSG-----IVGLLRMMAKADPMMRQVY------ 79  Oligotropha...
Q7D2P3            11 SRVHRALSRPNLLMGADRELVLLTGLAAVILIFvvltwyaalFGVAIWLV-----AVAALRMMAKSDPLMRRVY------ 79  Agrobacteri...
Q1QF55            11 NRIHRALSRPNLLFGADRELVLLTGLAAVILIFvvltwyaaiLGAAIWIV-----VVAALRMMAKADPMMRRVY------ 79  Nitrobacter...
WP_013418752       7 TPLYRALHRPNLFLGGEREPVLLTAIICAGLAVsslnliaimIGAGLWLV-----LIGAFRMMAKADPFMTRVY------ 75  Rhodomicrob...
WP_008327373       5 SPLFLGLVRPPKLLGLPIMYAMVWLFGSVLLFV---------WVQHIAVLGVAALLYPVLWKAADWDPRFIDVMMTALQE 75  Rhodobacter...

jgi:Astex_2243    84 RRAHA--PfRRHWG 95 
jgi:Astex_2483    76 ---LRhlRqKGYFa 86 
jgi:CAP2UW1_4730  75 ---LRhrRyKPYYP 85 
CCE25742          75 ---LRsrRyKKYYP 85 
Q9PBT5            75 ---MRnrRyKAYYP 85  Xylella fastidiosa
Q6LB35            80 ---LRhiRyRPRYR 90  Oligotropha carboxidovorans
Q7D2P3            80 ---LRhvSyRSHYR 90  Agrobacterium fabrum str. C58
Q1QF55            80 ---ARhiSyRPNYR 90  Nitrobacter hamburgensis X14
WP_013418752      76 ---LRqlRyGAYFP 86  Rhodomicrobium vannielii
WP_008327373      76 TPPTR--N-RSIhg 86  Rhodobacterales
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