4FLB,2KM4


Conserved Protein Domain Family
CTD_bind

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pfam04818: CTD_bind 
RNA polymerase II-binding domain.
This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase II.
Statistics
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PSSM-Id: 398473
Aligned: 218 rows
Threshold Bit Score: 54.1273
Threshold Setting Gi: 74883315
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4FLB_A                8 SSLDRKFQS----Vt----nTMESIQGLSSWCIENk------kHHSTIVYHWMKWL------RRsaypH-----RLNLFY 62 
EER90236            247 DVLNNL--N----G------TKESIKGAKSWFMQRl------pFTPALAEALKERVfvl-edSE----R-----QLHIIF 298 sorghum
EFJ10796            231 GLLDNL--S----G------TKEAIKNARNWFVQRs------tFAPTLVEVLRDRVtksdgnVD----S-----QMNILY 283 Selagine...
WGS:AFBI:EDEG_04036   5 EFLIHNLQT----Li----nTQESIKSVSYYIRLNs------qNYLIILEIFKIEFs-----------KsnayhKLNLLY 59  Edhazard...
ELA48310              7 ETFIREVRT----Lv----pTQEKIKTLALYMKTTs------aESTRMVRILDQEYa-----------NsnayhKLNIFY 61  Vavraia ...
Q8SWM7                7 EYLLKSLIN----Ll----pTEEQMKTVGLFIRTFk------kDYRAIVDGWMFVYg-----------KssayhKLNLLY 61  Encephal...
EEQ82938              7 DYFLKLLKE----Lt----iADEQIKSLGVYVISFk------eEYDNILEAYSFLYk-----------DssihhKLVLLY 61  Nosema c...
EOB11909              7 DYFLKQLKQ----Ls----pTEEQIKTLGLYIKTFk------eEYKNIMEAFEYVYn-----------SsnshhKLIMLY 61  Nosema b...
ESS29592            295 DVVLSLEKQ----A------TSTAIRSGRHWMEVNggg--seeAAQSLACALKKKqat-lgsFL----H-----KLNVLY 352 Toxoplas...
Q7RQI5               44 EVLEKDKNKfdmfInfyeenKTNNMNDINDWILNKcnknddnnNKINYSKVIASWFydrmlk-cltfkN-----KLNLIF 117 Plasmodi...
4FLB_A               63 LANDVIQNC-KrKNaI------IFRESFADVLPEAAALV-------KDPsVSKSVERIFKIWEDRNVY-PEEMIVAL 124
EER90236            299 LVNDILFESlQ-RR-TnirdldNEAIAFKSVLGSMLARVynn--sqSKDdNQTRIEKILQFWGSKEVY-DQETIANF 370 sorghum
EFJ10796            284 LVNDILFSSlQ-SR-LntkeldGVALAFRPVLSSILVAIyqn--prVNDaEREQVEKMLQFWRTKEVY-DPDTVYSL 355 Selaginella...
WGS:AFBI:EDEG_04036  60 LLNEIIKSEkClDPsSe-----KLVNEFKQILPSLFLDAcksgkvlENThVVEKLRELQNFWTKKKLI-KENSINLL 130 Edhazardia ...
ELA48310             62 LANELIQTIkKnEKdLa-----LLLEQIKSFVVSNFDDAnae--msKHPvLKGKLMELKNVWVERRLFeNAELANSP 131 Vavraia cul...
Q8SWM7               62 LANEVVQTTrDaDPdSi-----ELKIMFKKAVNEVFEETkka--tmENPsLYKKYCELENVWVQRNVMvMESHGINL 131 Encephalito...
EEQ82938             62 LANQILQSVkGnDDsIs-----GLQNGFKKFIIENFFKSkre--alPYStICEKFNDLERVWKERGVV-------KL 124 Nosema cera...
EOB11909             62 LANEILQTDkSyDAdSl-----QLKKELREFIQKTFGKSkae--akKHQpLYKKYCDLENVWEERSVI-------NI 124 Nosema bomb...
ESS29592            353 LVHDVVQNEfV-HKkGs-----vLISAFKPYLVWMLRDAyqa--aaRDPsSIEKVEKILSLWVKRGII-DEDEQEEM 420 Toxoplasma ...
Q7RQI5              118 IYHEIIRNLmLnNKhKe-------MNEFKKYMNPMIQDVytc-ayyKDQsSISVLLQIVYKWKELNIN-DNNETKTL 185 Plasmodium ...
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