Conserved Protein Domain Family
Agro_virD5

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pfam04730: Agro_virD5 
Agrobacterium VirD5 protein
The virD operon in Agrobacterium encodes a site-specific endonuclease, and a number of other poorly characterized products. This family represents the VirD5 protein.
Statistics
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PSSM-Id: 368086
Aligned: 2 rows
Threshold Bit Score: 1301.24
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
vbi:Avi_8208 165 QEFRSDASKRRRTSSIDQKIGFPHAFEFDGMRLGSPEREVYENWSKLQAPSWKDLIIDARLEAIDSSGWLNE-SNNSSVF 243
WP_010974921 167 EEFRSEASKRKRKKPIDQDENSPTSFYYDGMRLGEPEREAYDNWGNAEPPTWKDLVLKARLDAIDSSAWLFAsEGSSSTF 246 Agrobacterium
vbi:Avi_8208 244 EYEGLPLGEGERLAYEKWLGPAQPGWEDLVVDARIAELDRVASMSCSH---ERGKETPSNECERVPRVPIDDDEVSCASF 320
WP_010974921 247 EYEGIPLGEGERQAYKEWQEDAQPTWEDLVINARMAELDHPSWITDEHnslEENLEFRPDARQASLKDSTDQRKSSSASF 326 Agrobacterium
vbi:Avi_8208 321 VYDGV----AERAAHNRGSKPYQPTWEDLIIDARQAVIEGDAESNPVIGTTPSSVFSYEGMSLGDAERRAYGHWKQPAQP 396
WP_010974921 327 IYDGMklgePEHAAYENWSKPERPSWEALILDARQASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQSYGRWRQPAQP 406 Agrobacterium
vbi:Avi_8208 397 RWQNLVVNARLAELDPAAWIPDEHDPFEDGKVTGLLSEASTNSKSRLSLVEQLEARPlCLTRDAAQEQTNVQNLACTQLE 476
WP_010974921 407 RWQNLVVNARLADLDPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGQSDSGRP-AFAYLAAQEASHLQSPACSQLE 485 Agrobacterium
vbi:Avi_8208 477 ARRVLNFGPSGSDTDQTGSIAKSSPLDDVTKVKRLGSRSRRGARAAANDEIFHTKGSPSHGTGLTPQSTQPEKAASTRSD 556
WP_010974921 486 TRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQGLLSEDCGQAAEPSPSEQTTRPRTD 565 Agrobacterium
vbi:Avi_8208 557 NIGTYGSRKNERARLATETGKYESEHIFGFKVVHHTLRSTKEGRRLERPMPAYLECKELHRQHVGTGRGRTGLVGRGWPD 636
WP_010974921 566 NIGTYASRKNERARLATETGKYESEHIFGFKVVHDTLRATKEGRRLERPMPAYLEYKELHRQHVGTGRGRTGLVGRGWPD 645 Agrobacterium
vbi:Avi_8208 637 DASYRSDQRATLSDPVASTESVTASNGYQLNQLGYAHQLANDGLQCETPDGVIMPLQVATTSYNYTVSRDPVLSSPCKDQ 716
WP_010974921 646 DASYRADQRATLSDPVASAEGATASNGYQLNQLGYAHQLATHGLQSETPDGVTMPIQVATISYNYTVSRDPVLSPPSKEQ 725 Agrobacterium
vbi:Avi_8208 717 TSELLHLGPRGQTEAVLARETALTGKWPTREREQKVYREFLALYDVKKDLETMPLGLRKKKALLVSALNRTAASIGAS-- 794
WP_010974921 726 APPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLDAKQLGVRQKKQALVAALNRTAGLIGASpl 805 Agrobacterium
vbi:Avi_8208 795 -------KAENAFDEFYERRIYDPRDRARDNI 819
WP_010974921 806 eaqsstaEVEYTTDEPDERRVYDPRDRGRDKA 837 Agrobacterium
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