Conserved Protein Domain Family
HD-ZIP_N

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pfam04618: HD-ZIP_N 
HD-ZIP protein N-terminus
This family consists of the N termini of plant homeobox-leucine zipper proteins. Its function is unknown.
Statistics
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PSSM-Id: 398351
Aligned: 23 rows
Threshold Bit Score: 74.3745
Threshold Setting Gi: 241921342
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EER94486      23 LGLSLSLGI---ATTAATPVevdppprqqqqqRAISVAPISSLP-----APQ----------WWngpaG----------- 73  sorghum
CBI29502       8 LGLSLSLSF---PQDAHRP-------------LQLNLMPSLLPAss-ssPSPspfa--lqkpSW----H----------- 53  wine grape
XP_006385549   9 LGLSLSLSV---PQNQHS--------------LQFNLMPSLVPSta--aSSLsgfn--pqkpSW----N----------- 52  black cottonwood
XP_006367464   8 LGLSLSLSF---SAEKRT--------------TTINLIPSTII------SPSsaf----nnnYWt--tH----------- 47  potato
Q7XC54        20 LGLGLSLGVaggAADDEQPP------------PRRGAAP----------PPQqq------lcGWn--gG----------- 58  Japanese rice
XP_006662603  21 LGLGLSLGV---GAVDEQP-------------CRGARVPSPAAP-----PPPsq------ecSWs--gA----------- 60  malo sina
XP_009401762   8 LALSLSLSS---STNHFDHSs----------------------------PSRplpsscvqkpRWs---H----------- 42  wild Malaysian ...
Q05466         8 LGLSLGLNF---PKKQ----------------INLKSNPSVSVT-----PSSssfgl-frrsSW----N----------- 47  thale cress
XP_009388885   7 LGLSLSLSS---SSHHH-HLp-----------PQLHLMPPSSSPaasvpLPSppfpc-------hqrtQwtdllaraekr 64  wild Malaysian ...
XP_009407821   7 LGLSLSLSS---SSHHHRHLp-----------LQLNLMPSSSas---grPPSppfpc-hqttQWaglladsdk------- 61  wild Malaysian ...
EER94486      74 LFFSPSsgmkmdpslerkhqhqqqqqqqaAAT-SYSHdmPFLRGIDVNRRATagetr---rgrsCS-EDEEPGASSPNST 148 sorghum
CBI29502      54 DAFPSSdrt------------------seTCR-GDAR--SFLRGIDVNRLPS------------TAdCEEEAGVSSPNST 100 wine grape
XP_006385549  53 ATFPPSdqn------------------sdPYR-AETR--SFLRGIDVNRLPS------------TAdCEEEAGVSSPNST 99  black cottonwood
XP_006367464  48 PPFPHSspdl----------------nteACRlVETK--SFLKGIDVNRMPA-------------TaEEEEGGVSSPNST 96  potato
Q7XC54        59 GLFSSSssdhr-------------grsamMAC-HDVIemPFLRGIDVNRAPAaetttttargpsCSeEDEEPGASSPNST 124 Japanese rice
XP_006662603  61 GLFSSSssdrrst----------tmmtamAAC-HDVe-mPFLRGIDVNRAPAettr----pglsCSeEDEETGASSPNST 124 malo sina
XP_009401762  43 LLFAPSedrpt--------------ldvwRGA-GDAQ--PVLRMIDVNWASSaaa-------aaGRdSEEEADASSPDSA 98  wild Malaysian ...
Q05466        48 ESFTSSvpn------------------sdSSQ-KETR--TFIRGIDVNRPPSt-----------AEyGDEDAGVSSPNST 95  thale cress
XP_009388885  65 PVVDMS-----------------------GGA-AEARslPRLRGIDVNRAPAga---------tERdSEEDAGTSSPNST 111 wild Malaysian ...
XP_009407821  62 ----------------------rpvlevcggA-VDARslPLLRGIDVNRAPSsg--------avERdSEEDAGASSPNST 110 wild Malaysian ...
EER94486     149 LSSLSG-KRAAPA 160 sorghum
CBI29502     101 ISSVSG-KRSERE 112 wine grape
XP_006385549 100 ISSISG-KRSERE 111 black cottonwood
XP_006367464  97 ISSLSGnKRSERE 109 potato
Q7XC54       125 LSSLSG-KRGAPS 136 Japanese rice
XP_006662603 125 LSSLSG-KRGAPA 136 malo sina
XP_009401762  99 TSSVGG-KRAERD 110 wild Malaysian banana
Q05466        96 VSSSTG-KRSERE 107 thale cress
XP_009388885 112 LSSVSG-KRGERD 123 wild Malaysian banana
XP_009407821 111 LSSVSG-KRAERD 122 wild Malaysian banana
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